Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01344 ATGGTGAACTTCACAGTTGATGAACTTCGGCGGATTATGGATCGCAAACACAATATAAGGAATATGTCTGTTATTGCTCATGTTGATCATGGAAAATCCACACTCACTGATTCTCTGGTGGCTGCTGCTGGTATCATAGCACAAGAGGTTGCAGGAGATGTTAGGATGACAGATACCCGTCAAGATGAAGCTGAGCGTGGTATCACTATCAAGTCCACTGGCATCTCTCTCTACTATGAGATGACAGAGGGTGATTTGAAGAATTTCAAGGGAGAGCGTGAAGGGAATGAGTTCCTTATAAATCTCATTGACTCACCTGGGCATGTGGATTTCTCATCTGAGGTCACTGCCGCGCTTCGCATCACTGATGGGGCACTTGTGGTGGTGGATTGTGTTGAGGGTGTGTGTGTCCAGACAGAAACTGTGCTGAGACAAGCCCTTGGAGAAAGGGTTAAGCCTGTTTTAGCTGTTAACAAGATGGATAGGTGCTTCCTTGAGCTCAACCTTGATGCAGAGGAGGCCTACCTTACATTTCAGAGGGTTGTTGAGAGTGCAAATGTCATCATGGCAACCTATGAAGATGCTCTACTTGGTGATGTTCAGGTATACCCTGAGAAGGGAACAGTTGCCTTTTCTGCTGGTTTGCATGGATGGGGTTTTACCATTACCAACTTCGCCAAGGTGTATGCTTCTAAGTTTGGAGTTGATGAGGCAAAGATGATGAGTAGGCTTTGGGGTGAGAATTTCTTTGACTCTGCCACCAAAAAGTGGACCAAGAAGCACACCGGGACTTCTACTTGCAAGCGTGGCTTTGTTATGTTCTGTTATGAACCAATCAAACAGATTATTCAACTTTGCATGAATGATCAGAAGGATAAGCTGTGGCCAAAGTTGCAACAGCTTGGGTTGAAATTGAAGTCAGAGGAAAAGGAGTTAACAGGAAAGGCTTTGATGAAGCGTGTTATGCAGAGCTGGCTCCCAGCAAATAGGGCCCTTCTGGAGATGATGATATTTCACCTTCCTTCTCCTGCCAGTGCTCAAAAATATCGTGTTGATAACTTGTATGAGGGTCCCCTGGATGATCCTTATGCTCATGCTATCAGAAATTGTGACCCTGATGGACCTTTAATGCTCTATGTCTCAAAGATGATTCCTGCATCTGATAGGGGTAGGTTTTATGCTTTTGGCCGAGTCTTCTCTGGTAAGGTTTCAACCGGTTTGAAGGTCAGAATCATGGGACCAAACTATGTTCCAGGGAAGCAAAAAGACTTGTATGTTAAAAGTGTTCAGCGAACTGTAATTTGGATGGGAAAGAAACAGGAAACAGTTGAGGATGTGCCTTGTGGCAACACAGTAGCTATGGTGGGTTTGGACCACTTCATCACCAAGAATGCTACATTAACAAACGAGAAGGAAGTTGATGCACACCCAATTCGTGCTATGAAGTTTTCTGTGTCACCGGTGGTAAGTGTTGCTGTTACAAGCAAGGTTACATCAGATCTTCCTAAGCTTATTGAAGGCCTAAAGCGTTTAGCAAAGTCAGACCCTATGGTGGTCTGCACAATGTCAGAGACAGGAGAGCATATAATATCTGCTGCTGGTGAGCTCCATCTTGAAATCTGCTTGAAGGACTTGAAGGATGATTTTATGAATGGTGCAGAGATTTCAATATCTGATCCAATTGTCTCCTTCCGCGAGACTGTGTTTGAGAGGTCTTGCCGTACAGTGATGAGCAAGTCACCTAACAAACACAACCGTCTGTACGTGGAAGCAAGGCCAATGGAGGATGGACTTGCAGAGGCAATTGATGATGAAAAGATTGGACCAGGGGTTGACCCCAGAAATCGGTCTAAAATATTGTCTGAAGAGTTTGGTTGGGACAAGGATCTGGCAAGGAAAATATGGTGTTTTGGCCCTGAGGGTAAAGGACCCAACATGGTGATAGATACTTGCAAGGGTGTACAGTACCTCAATGAAATCAAAGACTCGGTTGTTGCTGGGTTTGAGACAGCATCAAAATCAGGTCCAATGGCTGAGGAGAACATGCGAGGGGTCTGCTTTGAAATTTGTGATGTTGTTCTTCATGCTGATGCCATTCACCGAGGAGGTGGCCAGATCATTCCAACTGCTAGAAGGGTCTTCTGTGCAGCCATGCTGACAGCAAAACCAAGGCTTCTTGAACCTGTGTATCTTGTGGAAATTCAAGCACCGGAACAGGCTCTTGGCGATATATACAGTGTTGTTAACCAGAAAAGAGGGCATGTGTTTGAGGAAATCCAGAGGCCTGGCACCCCACTTTACAATATAAAAGCATATTTGCCTGTTATTGAGTCATTTAGATTCAATGAATCACTAAGGGCTCAAACTGGAGGTCAAGCTTTCCCACAGTTAGTATTTGACCACTGGGATATGGTGCCATCGGATCCACTAGAACCTGGCACTCCTGCTGCTGCACGTGTGGCTGAGATAAGAAGGAAAAAAGGCTTGAAAGAACAAATGATGCCCCTGTCTGAGTTCGAGGACAGACTTTGA 2532 0.4506 MVNFTVDELRRIMDRKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTEGDLKNFKGEREGNEFLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERVKPVLAVNKMDRCFLELNLDAEEAYLTFQRVVESANVIMATYEDALLGDVQVYPEKGTVAFSAGLHGWGFTITNFAKVYASKFGVDEAKMMSRLWGENFFDSATKKWTKKHTGTSTCKRGFVMFCYEPIKQIIQLCMNDQKDKLWPKLQQLGLKLKSEEKELTGKALMKRVMQSWLPANRALLEMMIFHLPSPASAQKYRVDNLYEGPLDDPYAHAIRNCDPDGPLMLYVSKMIPASDRGRFYAFGRVFSGKVSTGLKVRIMGPNYVPGKQKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDHFITKNATLTNEKEVDAHPIRAMKFSVSPVVSVAVTSKVTSDLPKLIEGLKRLAKSDPMVVCTMSETGEHIISAAGELHLEICLKDLKDDFMNGAEISISDPIVSFRETVFERSCRTVMSKSPNKHNRLYVEARPMEDGLAEAIDDEKIGPGVDPRNRSKILSEEFGWDKDLARKIWCFGPEGKGPNMVIDTCKGVQYLNEIKDSVVAGFETASKSGPMAEENMRGVCFEICDVVLHADAIHRGGGQIIPTARRVFCAAMLTAKPRLLEPVYLVEIQAPEQALGDIYSVVNQKRGHVFEEIQRPGTPLYNIKAYLPVIESFRFNESLRAQTGGQAFPQLVFDHWDMVPSDPLEPGTPAAARVAEIRRKKGLKEQMMPLSEFEDRL 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01344 843 SUPERFAMILY Ribosomal protein S5 domain 2-like 562 726 IPR020568 -
Cca10g01344 843 SUPERFAMILY EF-G C-terminal domain-like 484 560 IPR035647 -
Cca10g01344 843 Gene3D Translation factors 343 484 - -
Cca10g01344 843 CDD EF2_snRNP_III 496 559 - -
Cca10g01344 843 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 1 842 - -
Cca10g01344 843 PANTHER TRANSLATION ELONGATION FACTOR EF-2 SUBUNIT 1 842 - -
Cca10g01344 843 SMART EFG_IV_2 610 722 IPR005517 GO:0005525
Cca10g01344 843 Gene3D - 723 843 - -
Cca10g01344 843 SUPERFAMILY EF-G C-terminal domain-like 727 826 IPR035647 -
Cca10g01344 843 Pfam Elongation Factor G, domain III 487 549 IPR041095 -
Cca10g01344 843 Pfam Elongation factor G, domain IV 614 722 IPR005517 GO:0005525
Cca10g01344 843 CDD aeEF2_snRNP_like_IV 559 731 - -
Cca10g01344 843 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 17 254 IPR000795 GO:0003924|GO:0005525
Cca10g01344 843 Gene3D - 570 722 IPR014721 -
Cca10g01344 843 Pfam Elongation factor Tu GTP binding domain 17 342 IPR000795 GO:0003924|GO:0005525
Cca10g01344 843 CDD EF2 20 230 - -
Cca10g01344 843 Pfam Elongation factor G C-terminus 724 810 IPR000640 -
Cca10g01344 843 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 58 73 IPR031157 -
Cca10g01344 843 PRINTS GTP-binding elongation factor signature 21 34 IPR000795 GO:0003924|GO:0005525
Cca10g01344 843 PRINTS GTP-binding elongation factor signature 65 73 IPR000795 GO:0003924|GO:0005525
Cca10g01344 843 PRINTS GTP-binding elongation factor signature 101 111 IPR000795 GO:0003924|GO:0005525
Cca10g01344 843 PRINTS GTP-binding elongation factor signature 117 128 IPR000795 GO:0003924|GO:0005525
Cca10g01344 843 PRINTS GTP-binding elongation factor signature 153 162 IPR000795 GO:0003924|GO:0005525
Cca10g01344 843 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 341 IPR027417 -
Cca10g01344 843 SUPERFAMILY Translation proteins 342 476 IPR009000 -
Cca10g01344 843 Gene3D Elongation Factor G (Translational Gtpase), domain 3 486 563 - -
Cca10g01344 843 TIGRFAM small_GTP: small GTP-binding protein domain 20 168 IPR005225 GO:0005525
Cca10g01344 843 Gene3D - 3 237 IPR027417 -
Cca10g01344 843 SMART EFG_C_a 724 813 IPR000640 -
Cca10g01344 843 Pfam Elongation factor Tu domain 2 393 467 IPR004161 GO:0005525
Cca10g01344 843 CDD eEF2_snRNP_like_C 727 806 - -
Cca10g01344 843 CDD EF2_II 375 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01344 Cca-Chr10 18511333 18514885 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01344 1 843 Eukaryotic Initiation Factors Gene Family AT1G56070 83.155 0.0 1493
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01344 K03234 - tcc:18594569 1448.34