Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01340 ATGGCCGTTGAGGCGCGCCATCTTAATCTCTTCCCATCTCAACTCATAGCCAACCGGGAAGTGATGAATTCAATTGACGCCAATTTCAACGTATACAACACTCAGATGAGTTATTCTTCGTTTCCTCCGTTATCCGGCGCCGTCACGGAAACCGTGCTGCCGTCGTCGGTGTACAATTCTCCCGGAAACGCCGTGAAATCCGAAAGCAGTCTCACTTACAACAATAACGTCGTTACTCCCGCGTCGAGAAAACGGTCCAGAGATAATTACAGTTATAATTACAGTTCTGACGGTTATTTTTCGTTTCTCGGCCAAGACGTGTCTCTCCAGATCCAACAACAGCAACTCGACATCGAGCGGCTAGTCATGCAAGGCATGGAGAAAGTGAGAATAGAGTTCGACGAGAACAGGAAGAAGCTAATGAGGAGAATAATCCAAGCGATTGACGTTGGCGTGATGAAGAGGCTGAAGGCGAAGGAGGAAGAGATAGAGAAAATCGAGAAACTGAATTGGGCGTTGGAAGAGAGAGTGAAGTCTCTGTGCATGGAGAATCAGATATGGCGCGAATTGGCGCAGAGCAACGAAGCCACGGCGAATGCTCTCCGGACGAACTTGGAGCAGGTGCTGGCGCAGCGGTGCGGCGGCGGGCCGGCGGTGGAGAGCGAGGAGACGGAGGACGCGCAGTCGAGCTGCGGGAGCACCGCGGACGAGGAAGGGTGGCGCACGGTAGCGGGGTGCGCAGGGGCGAAGGATAAGAGGGAAGGCGGCGAGAGTAACGTGAGGCTGTGCAGGAAGTGTGGGAAGGAAGAGTCGTGTGTGCTGATTTTGCCGTGCCGGCATCTGTGTTTGTGTACTGTGTGCGGGTCTACCCTACACACTTGTCCAGTTTGTAAATCCTTCAAGACTGCTAGTGTTCATGTTAACATGTCATGA 933 0.5284 MAVEARHLNLFPSQLIANREVMNSIDANFNVYNTQMSYSSFPPLSGAVTETVLPSSVYNSPGNAVKSESSLTYNNNVVTPASRKRSRDNYSYNYSSDGYFSFLGQDVSLQIQQQQLDIERLVMQGMEKVRIEFDENRKKLMRRIIQAIDVGVMKRLKAKEEEIEKIEKLNWALEERVKSLCMENQIWRELAQSNEATANALRTNLEQVLAQRCGGGPAVESEETEDAQSSCGSTADEEGWRTVAGCAGAKDKREGGESNVRLCRKCGKEESCVLILPCRHLCLCTVCGSTLHTCPVCKSFKTASVHVNMS 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01340 310 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 2-RELATED 1 309 - -
Cca10g01340 310 ProSiteProfiles Zinc finger RING-type profile. 263 298 IPR001841 -
Cca10g01340 310 Coils Coil 156 176 - -
Cca10g01340 310 Pfam Zinc finger, C3HC4 type (RING finger) 261 299 - -
Cca10g01340 310 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 309 IPR017066 -
Cca10g01340 310 MobiDBLite consensus disorder prediction 216 235 - -
Cca10g01340 310 PIRSF SBP1_RNase_bind 5 310 IPR017066 -
Cca10g01340 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 310 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01340 Cca-Chr10 18475453 18476930 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01340 256 299 Miscellaneous Gene Families AT4G39050 36.364 9.00e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01340 K19042 - gmx:100809593 395.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01340 10 18475453 18476930 Cca10g01340 10 18475453 18476930 ECH