Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01335 ATGCTCCATCACACACCTTTGCCATTAGATAAAGAGATTGGATTTCAGGGGGAGAACAACGTTGATGATACGATATCTCCTCCATTTCTAGTTCGTTCAAATGAATTCAAAGAGGGGACCCCTTCATTTACATGGACTTCTCACATTCCGTCTTCCAATACACTTGCCACGCCCCAATATCCACTGGCCCACTTGATTCTGAACGCAAAGGAAAAACCTAGCTACTCCGAATCCATAAATAAGAAGAGGACGCCACGAAGCAAGATTTGTTCGAGCTTCAATTTACCGGAGAGGAACGTGCTTTGCTCGAGCAAAATTCGTCACTCTAGTTGCACTGTGCATCACTCGGAACCAATCGTCAAAATGTCGCGGAAGGGTTTGATGGAACAAGATCTGAGTAAGTTGGATGTTACAAAATTGCATCCACTTTCTCCAGAAGTCATATCACGTCAGGCTACTATTAATATCGGTACTATAGGTCATGTGGCACATGGCAAGTCAACAGTTGTGAAAGCAATATCAGGCGTGCAGACTGTCCGTTTCAAAAATGAGTTGGAGCGTAACATTACAATCAAGCTTGGCTATGCAAATGCAAAAATATACAAGTGTGAAGATGAACGGTGTTCTAGGCCTATGTGCTACAAGGCTTATGGAAGTGGAAAGGAAGATAACCCTATGTGTGATGTGCCAGGGTTTGAAAACTCTAAGATGAAATTGCTGAGACATGTTTCATTTGTGGATTGCCCAGGACATGATATTCTCATGGCTACAATGCTTAATGGAGCAGCTATCATGGATGGAGCTTTGCTACTCATAGCTGCCAATGAAAGCTGCCCACAACCACAAACCTCTGAGCATTTAGCTGCTGTGGAAATTATGCGTCTACAGCACATAATAATCCTTCAGAATAAGGTAGACTTGATTCAAGAAAATGTGGCAATCAATCAGCATGAAGCAATTTCAAAGTTTATACAAGGAACTGTTGCTGATGGTGCACCAGTAGTGCCTATTTCAGCACAGTTGAAGTATAATATTGATGTTGTGTGTGAGTATATTGTGAAGAAGATTCCAATTCCTGAAAGGAACTTTATTTCTCCACCTAATATGATAGTAATTCGGTCATTTGATGTCAATAAGCCTGGTTTTGAGGTTGATGAGATAAAAGGAGGTGTGGCTGGTGGAAGCATCCTCAGGGGTGTTTTGAAGGTCAATCAATTCATTGAAGTTCGACCTGGAATTGTTGTTAAAGATGAGAGTGGAAATATCAGATGCACACCTATATACTCGAGAATAGTTTCATTGTATGCTGAACAAAATGAGCTTCAATTTGCTGTGCCTGGAGGCCTAATTGGTGTTGGGACAACAATGGATCCCACTTTGACACGTGCTGATAGGTTGGTAGGTCAAGTTCTAGGAGAGGTTGGATCACTGCCTGAGGTTTTTGTTGAACTTGAGGTTAACTTTTTCTTGCTTCGACGGCTTCTTGGTGTCCGGACAAAAGGCTCAGAGAGACAGGGAAAGGTATCTAAGCTTGCCAAAGGAGAGATGTTAATGTTGAACATAGGATCAATGTCAACGGGGGCTAGAGTTATTGCTGTGAAGAATGATTTGGCGAAGTTACAACTTACTTCCCCTGTGTGCACCAGCAAGGGTGAGAAGATTGCACTTAGTCGACGTGTGGAGAAGCATTGGCGTCTTATTGGGTGGGGCCAAATTCAAGCAGGAATCACTCTTGATGTCCCTCCTGCTCCCCATTTGAGTTGA 1764 0.4274 MLHHTPLPLDKEIGFQGENNVDDTISPPFLVRSNEFKEGTPSFTWTSHIPSSNTLATPQYPLAHLILNAKEKPSYSESINKKRTPRSKICSSFNLPERNVLCSSKIRHSSCTVHHSEPIVKMSRKGLMEQDLSKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDERCSRPMCYKAYGSGKEDNPMCDVPGFENSKMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAISKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFISPPNMIVIRSFDVNKPGFEVDEIKGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIRCTPIYSRIVSLYAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKGEMLMLNIGSMSTGARVIAVKNDLAKLQLTSPVCTSKGEKIALSRRVEKHWRLIGWGQIQAGITLDVPPAPHLS 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01335 587 CDD eIF2_gamma_II 362 475 IPR044127 GO:0000049
Cca10g01335 587 Pfam Initiation factor eIF2 gamma, C terminal 483 572 IPR015256 -
Cca10g01335 587 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 151 360 IPR000795 GO:0003924|GO:0005525
Cca10g01335 587 Pfam Elongation factor Tu GTP binding domain 153 357 IPR000795 GO:0003924|GO:0005525
Cca10g01335 587 Pfam Elongation factor Tu domain 2 389 471 IPR004161 GO:0005525
Cca10g01335 587 CDD eIF2_gamma_III 478 572 IPR015256 -
Cca10g01335 587 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 122 584 - -
Cca10g01335 587 Gene3D Translation factors 478 576 - -
Cca10g01335 587 Gene3D Translation factors 364 477 - -
Cca10g01335 587 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 FAMILY MEMBER 122 584 - -
Cca10g01335 587 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 144 363 IPR027417 -
Cca10g01335 587 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 476 573 IPR009001 -
Cca10g01335 587 PRINTS GTP-binding elongation factor signature 298 307 IPR000795 GO:0003924|GO:0005525
Cca10g01335 587 PRINTS GTP-binding elongation factor signature 244 254 IPR000795 GO:0003924|GO:0005525
Cca10g01335 587 PRINTS GTP-binding elongation factor signature 260 271 IPR000795 GO:0003924|GO:0005525
Cca10g01335 587 PRINTS GTP-binding elongation factor signature 155 168 IPR000795 GO:0003924|GO:0005525
Cca10g01335 587 Gene3D - 151 361 IPR027417 -
Cca10g01335 587 CDD eIF2_gamma 154 361 IPR044128 GO:0005525
Cca10g01335 587 SUPERFAMILY Translation proteins 361 475 IPR009000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01335 Cca-Chr10 18374728 18384811 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01335 122 584 Eukaryotic Initiation Factors Gene Family AT1G04170 90.733 0.0 877
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01335 K03242 - gmx:100805852 913.679