Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01315 ATGGCTTCCGGGAGGGTAAGCACCGAGACGGTGGCGAAAGCCGTCGACGCTCTCCTGAAATGGCGTCGCTCCCAATCGGAGACTCAAAAACCCAAGCTCTTCGACGAGGACGAGGAATTCGTGTACCTAATCCTGACGATGAAGAGGATTCCGTCGAACTCTCGCGTGAACCCTCACAAGGTCCCTCTCCCGCACTCGCTAATCTCTCCGTTCTCGGAGCAGTGCCTGATCCTCGACGACAGGCCCAACAAGGCCCGCGTGACGAAGGCCCAGGTCCAGGCCAAGATCCAGGCCGACTCCATTCCCGTCGCCAAGGTCCTCAAGCTCTCGAAGCTCGCCTCCGATTACCGCCCCTTCGAGGCCAAGCGCAAGCTCTGCGACTCCTACGACCTCTTCTTCGCCGAGAAGAGCATCGTTCCGTTGCTTCCGCGGCTTCTCGGGAAGCACTTCTTCAAGAAGAGGAAGATTCCCGTGCCGGTGGATTTGAGCAAGAAAAACTGGAAGGAGCAGGTGGAGAAGGCGTGCTCCTCCGCCATGCTGTTCATGCGGACCGGCACGTGTAGTGTGGTTAGGGTTGCGAAGGTGAGGATGGAGAGGGATGAGATTGTGGAGAATGTTGTGGCGGCGGTTGAGGGAGTTGTGGAGGTTGTGCCGAAGAAGTGGGCGAATGTTAGGTCGCTGCATTTGAAGCTGCTGGAGAGTGTGGCGTTGCCTGTGTACCAGGTTGTGCCCGATGTGAAGTTGAAGATTGAGGGGGTTAGCGTTGAGGATGAGGCAGAGGTTGGGGCCaaggagaagaagaggaagaaggggaagGATGGTGATGTTCGTGAGAAGAAGAAGGGGAGGATTCATGAAGTTAGGTATATGGATGATAGTGTTGGTGAGGAGAAGATTGAGAATGGTGATGGTAGTGATGATGAAGTGGTGGATAAGAAGAGGAAGAAAGGGGTTGCGAGTGATGCGAGTGGCGGTAAGCGGTTGAAGAAGAAAGTGTCTAGTGCCACTAAGGAGAAGAAGAAGAAGGGATTGTCTGGTGAGAAGGGGGTTAAGGAAGATTTGGTTGTTAAGgatgaggaggctggtgatgatagtgatgatgaAATGGTGGATAAGAAGACGGAGAAAGGGGTTGCGAGTGATTCCAGTGGTGTTAAGCGGTTGAAGAAGAAAGATTCTAGTGCTACTAAGGAGAAAAAGAAGAAGGGATTGTCTGGTGGGAAGGGGGTTAAGGAGGGTTTGGCTGTTAAGGATGAGAATTCAGGggtgaagaagaagagaggggatgtggaggtgaaggctaagaaaagtgtgaaggttaagAGAATTGTCTCATCAAGGTGCTGCAGTCAAATTTGTTCGTGTGCACCGCGCGTGCTGATTAGCCACATGGCAGTGCCACAAGGGGTGCACGTGATCTGA 1422 0.4916 MASGRVSTETVAKAVDALLKWRRSQSETQKPKLFDEDEEFVYLILTMKRIPSNSRVNPHKVPLPHSLISPFSEQCLILDDRPNKARVTKAQVQAKIQADSIPVAKVLKLSKLASDYRPFEAKRKLCDSYDLFFAEKSIVPLLPRLLGKHFFKKRKIPVPVDLSKKNWKEQVEKACSSAMLFMRTGTCSVVRVAKVRMERDEIVENVVAAVEGVVEVVPKKWANVRSLHLKLLESVALPVYQVVPDVKLKIEGVSVEDEAEVGAKEKKRKKGKDGDVREKKKGRIHEVRYMDDSVGEEKIENGDGSDDEVVDKKRKKGVASDASGGKRLKKKVSSATKEKKKKGLSGEKGVKEDLVVKDEEAGDDSDDEMVDKKTEKGVASDSSGVKRLKKKDSSATKEKKKKGLSGGKGVKEGLAVKDENSGVKKKRGDVEVKAKKSVKVKRIVSSRCCSQICSCAPRVLISHMAVPQGVHVI 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01315 473 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 5 291 - -
Cca10g01315 473 MobiDBLite consensus disorder prediction 338 358 - -
Cca10g01315 473 CDD Ribosomal_L1 11 239 IPR028364 -
Cca10g01315 473 Pfam Ribosomal protein L1p/L10e family 32 235 IPR028364 -
Cca10g01315 473 MobiDBLite consensus disorder prediction 367 429 - -
Cca10g01315 473 SUPERFAMILY Ribosomal protein L1 8 240 IPR023674 -
Cca10g01315 473 MobiDBLite consensus disorder prediction 261 429 - -
Cca10g01315 473 Gene3D - 85 177 IPR016095 -
Cca10g01315 473 PANTHER RIBOSOMAL L1 DOMAIN-CONTAINING PROTEIN 1 5 291 - -
Cca10g01315 473 MobiDBLite consensus disorder prediction 261 328 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01315 128 230 Cytoplasmic Ribosomal Protein Gene Family AT2G27530 31.068 8.03e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01315 K14775 - gmx:100782862 506.908