Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01312 ATGGCCTCTTCAGTGATGGCTTCTGTGGCCCTCAAACCTGCCCCTTTCACTCTTGACAAGTCCTCAGTTAGAGGGCTTCCCTCCCTTTCAAGGAACTCCTCTTCCTTCAAAGTTGTGGCCAGTGGTGGCAAGAAGATCAAGACTGACAAGCCTTATGGAATTAATGGTGGCATGAACTTGAGGGATGGAGTTGATGCATCTGGCAGGAAAGGAAAGGGAAAGGGTGTTTACCAGTATGTGGACAAATATGGTGCTAATGTCGATGGGTACAGTCCTATCTACGACACCAAGGAATGGTCACCAACCGGTGATGTCTACGCTGGCGGTACGACTGGATTGGCTATCTGGGCTGTAACTCTAGCTGGTCTTCTAGCTGGTGGTGCACTTCTAGTCTACAACACAAGTGCTTTGGCTCAATAG 420 0.4929 MASSVMASVALKPAPFTLDKSSVRGLPSLSRNSSSFKVVASGGKKIKTDKPYGINGGMNLRDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKEWSPTGDVYAGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01312 139 Pfam Photosystem II 10 kDa polypeptide PsbR 41 138 IPR006814 GO:0009523|GO:0009654|GO:0015979|GO:0042651
Cca10g01312 139 PANTHER PHOTOSYSTEM II 10 KDA POLYPEPTIDE, CHLOROPLASTIC 1 139 IPR006814 GO:0009523|GO:0009654|GO:0015979|GO:0042651
Cca10g01312 139 PANTHER BNAANNG27100D PROTEIN 1 139 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01312 K03541 - gmx:100499745 258.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01312 10 17990401 17992341 Cca10g01312 10 17990401 17992341 ECH