Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01306 ATGACTTGTTTTCCTTTCTTATTCAATAAATCATCTTCTTCAGGAAGACAAGATCCAGAAATAGATGAAGGCATTCATAATGTTAGAATCTACACCTACAAAGAACTCAGAAATGCAACTGAAGATTTTAGTCCAGTCAATAAAATTGGAGAGGGCGGTTTTGGTTCTGTCTACAAGGGACGGCTCAAAGATGGAAAAGTTGCTGCAATAAAAGTTCTTTCGGCTGAATCAAGACAAGGGGTGAAGGAGTTCTTGACAGAGATTAATGTGATCTCAGAGATAGAGCATGAAAATTTGGTTAAGTTATATGGTTGTTGTGTGGAGAAAAATAACAGAATATTAGTCTACAACTACCTTGAGAATAACAGCCTATCACAAACTCTTCTAGGTGGAGGTCACAGTAGTATCTACTTTGATTGGCGAACACGATGTAAAATATGTGTTGGAGTTGCACGTGGGCTTGCCTTCCTTCATGAAGAAGTACGGCCTCCTATTGTTCATAGGGATATAAAAGCAAGCAATATCCTCCTTGACAAAGATCTTACACCCAAGATTTCAGATTTTGGTCTTGCGAAGCTTATTCCAGCAAATATGACTCATGTCAGCACGCGTGTTGCAGGAACAATAGGGTATTTAGCACCCGAGTATGCAATAGGGGGGAAGCTAACACGGAAAGCAGACATCTACAGCTTCGGTGTCCTCCTTGTGGAGATAGTAAGTGGAAGATGCAACACAAATTCACGGCTACCAATAGAAGAACAATTTCTTCTGGAGAGGACATGGGAACTTTATGAGCGAAAGGAATTGGTCGGCCTGGTAGACATGTCACTGAATGGGGAATTCGATGCTGAGCAAGCTTGTAAGTTTCTGAAGATTGGCCTTCTTTGCACGCAGGAATCGCCAAAGCTCCGGCCATCGATGTCATCTGTGGTCAAGATGCTCACTGGAAAAATGCATGTTGATGACAGTAAGATAACAAAGCCTGCCTTAATATCTGACTTTATGGACCTCAAAGTTGGGAAGAACCAAGAAAGTAGTAGTATTGATCCGAAGTATTCATCTATATACCATACATCCTCTTCATCAGACAACCATGACACTACCATGTCATCCCTCACAACTTCAACCTTGACTGCTAAATATGATCAAAGCATGTAA 1158 0.4102 MTCFPFLFNKSSSSGRQDPEIDEGIHNVRIYTYKELRNATEDFSPVNKIGEGGFGSVYKGRLKDGKVAAIKVLSAESRQGVKEFLTEINVISEIEHENLVKLYGCCVEKNNRILVYNYLENNSLSQTLLGGGHSSIYFDWRTRCKICVGVARGLAFLHEEVRPPIVHRDIKASNILLDKDLTPKISDFGLAKLIPANMTHVSTRVAGTIGYLAPEYAIGGKLTRKADIYSFGVLLVEIVSGRCNTNSRLPIEEQFLLERTWELYERKELVGLVDMSLNGEFDAEQACKFLKIGLLCTQESPKLRPSMSSVVKMLTGKMHVDDSKITKPALISDFMDLKVGKNQESSSIDPKYSSIYHTSSSSDNHDTTMSSLTTSTLTAKYDQSM 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01306 385 ProSiteProfiles Protein kinase domain profile. 43 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01306 385 SMART serkin_6 43 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01306 385 MobiDBLite consensus disorder prediction 344 370 - -
Cca10g01306 385 SUPERFAMILY Protein kinase-like (PK-like) 22 315 IPR011009 -
Cca10g01306 385 PANTHER - 2 375 - -
Cca10g01306 385 Pfam Protein kinase domain 46 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01306 385 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 375 - -
Cca10g01306 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Cca10g01306 385 Gene3D Phosphorylase Kinase; domain 1 13 118 - -
Cca10g01306 385 CDD STKc_IRAK 49 316 - -
Cca10g01306 385 ProSitePatterns Protein kinases ATP-binding region signature. 49 71 IPR017441 GO:0005524
Cca10g01306 385 Gene3D Transferase(Phosphotransferase) domain 1 119 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01306 Cca-Chr10 17901806 17908028 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01306 31 329 Receptor kinase-like Gene Family AT1G53430 56.522 2.63e-110 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca10g01306 Pkinase 1.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01306 - - gmx:100782320 672.544