Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01300 ATGATGGCATTGGAGTGTAGTTTCCACTTCCTAAATGGGGTTTACATGGTGCTCTTGTTTTGCCTTGGCATTGTCCTTGTGAGTTCGGTTAACGAAGAGGGTTTGAGTCTTTTGGGGTTCAAGGCTTCTCTTCATGACCCAAATAACAATCTCTATAACTGGGATTCTTCTAATTTGACTCCTTGCAATTGGACTGGTGTGTTTTGCACGGGTTCAGTGGTGACTGCTGTGAAACTTTACCAACTTAATCTCTCTGGTACTTTGGCTCCCACCATCTGTGATCTTCCAAACCTTCTTGAGTTGAATTTGTCAAAGAATTTCATCTCTGGTCCCATTCCCGATGGATTTGTTGACTGCGGTGGTTTGGAGATTTTGGACCTTTGCACAAATAGGCTTCACGGACCCCTTCTGACTACCCCTATTTGGAAAATCACTACACTTAGGAAGCTTTACCTGTGTGAAAACTACATGTATGATGAAGTGCCAGTGGAGCTTGGGAATTTGGCATCACTTGAGGAACTGGTCATATATAGCAATAATTTAACTGGAAGAATTCCCTCATCAATAAGAAAGTTGAAGCAGCTTAGAGTTGTAAGGGCAGGTCTGAATGCCCTCTCAGGGCCAATACCTGCTGAAATTAGTGAGTGTGAGAGCTTGGAGATATTGGGGTTGGCACAGAATCAGCTAGAAGGTTCCATTCCAAGGGAGCTACAAAGGCTTCAGAATCTCACCACTATACTTCTATGGCAAAACTCTTTATATGGGGAGATTCCTCCTGAGATTGGAAACATTAGCAGCTTGGAACTGCTTGCTTTGCACCAAAATTCACTAAGTGGTTCTGTCCCCAGGGAACTGGGGAAGCTATCCCAGTTGAAGAGGTTGTACATGTACACCAATCAGTTGAATGGAACAATTCCTTCAGAGCTAGGGAACTGCACAAATGCTGTTGAGATAGACCTCTCTGAAAACCGTTTGATTGGGATCATTCCCAAGGAGTTGGGGATGATATCTAATCTTAGCTTGCTTCATCTGTTTGAAAACAATCTTCAAGGTCATATTCCACGGGAGCTTGGTCAGTTGAGTCTGCTAAAAAATTTAGACCTGTCACTTAATAACTTGACAGGTACAATTCCACTGGAGTTTCAAAACCTTACATACATGGAGGATTTGCAGCTATTTGACAATCAACTTGAGGGTGTGATTCCTCCACATCTTGGAGCTGTTAGAAACCTTACTATTCTTGATATATCTGCAAACAACCTTGTTGGTATGATACCTTCCCATCTTTGTGAATATCAGAAGCTGCAATTCCTGAGCCTTGGGTCAAATATGTTGTTTGGAAATATTCCTGATAGCCTCAAAACTTGCAAATCTCTTGTGCAGCTTATGCTGGGGGACAACCTGTTGACAGGAAGCCTACCTGTTGAATTGTATGAACTGCACAATCTCACTGCACTTGAACTCTTTCAGAACCGATTTTCGGGGATAATAAACCCGGGAATAGGCCAACTCAGGAATCTAGAGAGGCTTCTCTTGTCAGCTAACTACTTTGAAGGCTATCTCCCTCCTGAGATTGGAAATTTGGCACAACTTGTCACATTCAATGTTTCCTCTAACCGTTTTAGTGGAAGTATTCCTCACGAGTTGGGAAAATGTGGTAGACTGCAGAGGCTTGATCTTAGCAGAAACCACTTCACTGGCATGCTTCCAAATGAAATTGGCAACCTGGTGAACTTGGAGCTGTTGAAAGTTTCTGATAATATGCTCTCAGGAGAAATACCAGGCACTTTGGGGAACCTTATTAGGCTCACAGACCTGGAACTAGGTGGAAACCGGTTTTCAGGAAACATCTCTTTTCACTTGGGAAAACTAATGGCTCTTCAGATTGCACTTAACCTGAGCCACAACAAACTTTCTGGCTCAATTCCTGATAGCCTTGGGAACTTGCAAATGCTAGAGTCCCTTTATCTAAATGACAATCAACTTGTTGGTGAGATTCCTGCATCAATTGGTGACCTTCTTAGTCTTGTAGTATGCAATGTATCTAACAACAAGCTGGTAGGGACTGTTCCAGACACCACTACATTTAGAAAGATGGATTTCACAAACTTTGCTGGAAACAACGGGTTGTGCCGTGTTGGCACTAATCATTGCCATCCATCTGTATCTCCCTTTCATTCTGCAAAACATAGCTGGATCAGAGATGGTTCATCAAGGGAAAAGATAGTGAGCATTGTTTCTGGGGTGGTTGGACTAGTTTCTCTAATTTTCATAGTGTGCATATGTATGGCCATGAGGCGCCGTAGCCATGCTGCTTTTGTTTCACTTGAGGGGCAAACAAAGACTCATGTCTTGGATAGCTATTACTTTCCGAAAGAAGGCTTTACATACCAGGATCTCTTGGAAGCCACTGGCAATTTTTCAGAAGATGCAGTTCTAGGAAGAGGAGCTTGTGGCACTGTTTACAAAGCTGTTATGAGTGATGGTGAAGTGATTGCTGTTAAGAAGCTGAATTCACGTGGAGAAGGAGCAAATAATGTTGATAGAAGCTTCCTTGCTGAGATTTCAACTCTTGGAAAGATCAGGCACAGGAACATTGTGAAGCTGTATGGATTTTGCTACCATGAGGATTCCAATCTTCTCTTATATGAATACATGGAAAATGGAAGCCTTGGGGAACAACTTCATTCAAGTGCAACCACTTGTGCATTGGATTGGGGTAGTCGGTATAAAATTGCTCTTGGAGCAGCTGAAGGGTTATGCTATCTTCACTATGATTGCAAACCTCAAATCATCCATCGTGATATAAAGTCAAACAACATATTACTTGATGAGGTGTTTCAGGCTCACGTTGGAGACTTTGGCTTGGCTAAGTTGATTGATTTTTCGTACTCAAAATCCATGTCTGCTGTGGCAGGTTCATATGGCTACATTGCCCCAGAATATGCTTACACCATGAAGGTGACTGAGAAGTGTGACATCTATAGCTTTGGGGTAGTTTTGTTGGAACTAGTTACTGGGAGGTCACCTGTTCAACCTTTGGAACAAGGTGGTGATTTAGTGACTTGTGTGAGAAGAGCAATTCAAGCATCAGTTCCCACATCTGAATTATTTGACAAAAGATTGAATCTGAGTGCACAAAAGACAGTGGAAGAAATGTCTCTTATTCTCAAAATTGCCCTGTTCTGCACCAGCACATCTCCTCTTAATAGGCCTACAATGAGAGAGGTCATTGCAATGTTGATTGATGCTAGGGAATATGTCAGCAACTCACCAACCTCACCTACATCAGAATCTCCATTGGATGAGGATGATGCCATTTCTTCCAAAGATAGTGGTCTTGAGTTGTAA 3351 0.4241 MMALECSFHFLNGVYMVLLFCLGIVLVSSVNEEGLSLLGFKASLHDPNNNLYNWDSSNLTPCNWTGVFCTGSVVTAVKLYQLNLSGTLAPTICDLPNLLELNLSKNFISGPIPDGFVDCGGLEILDLCTNRLHGPLLTTPIWKITTLRKLYLCENYMYDEVPVELGNLASLEELVIYSNNLTGRIPSSIRKLKQLRVVRAGLNALSGPIPAEISECESLEILGLAQNQLEGSIPRELQRLQNLTTILLWQNSLYGEIPPEIGNISSLELLALHQNSLSGSVPRELGKLSQLKRLYMYTNQLNGTIPSELGNCTNAVEIDLSENRLIGIIPKELGMISNLSLLHLFENNLQGHIPRELGQLSLLKNLDLSLNNLTGTIPLEFQNLTYMEDLQLFDNQLEGVIPPHLGAVRNLTILDISANNLVGMIPSHLCEYQKLQFLSLGSNMLFGNIPDSLKTCKSLVQLMLGDNLLTGSLPVELYELHNLTALELFQNRFSGIINPGIGQLRNLERLLLSANYFEGYLPPEIGNLAQLVTFNVSSNRFSGSIPHELGKCGRLQRLDLSRNHFTGMLPNEIGNLVNLELLKVSDNMLSGEIPGTLGNLIRLTDLELGGNRFSGNISFHLGKLMALQIALNLSHNKLSGSIPDSLGNLQMLESLYLNDNQLVGEIPASIGDLLSLVVCNVSNNKLVGTVPDTTTFRKMDFTNFAGNNGLCRVGTNHCHPSVSPFHSAKHSWIRDGSSREKIVSIVSGVVGLVSLIFIVCICMAMRRRSHAAFVSLEGQTKTHVLDSYYFPKEGFTYQDLLEATGNFSEDAVLGRGACGTVYKAVMSDGEVIAVKKLNSRGEGANNVDRSFLAEISTLGKIRHRNIVKLYGFCYHEDSNLLLYEYMENGSLGEQLHSSATTCALDWGSRYKIALGAAEGLCYLHYDCKPQIIHRDIKSNNILLDEVFQAHVGDFGLAKLIDFSYSKSMSAVAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELVTGRSPVQPLEQGGDLVTCVRRAIQASVPTSELFDKRLNLSAQKTVEEMSLILKIALFCTSTSPLNRPTMREVIAMLIDAREYVSNSPTSPTSESPLDEDDAISSKDSGLEL 1116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01300 1116 Gene3D Ribonuclease Inhibitor 317 432 IPR032675 -
Cca10g01300 1116 Gene3D Ribonuclease Inhibitor 433 722 IPR032675 -
Cca10g01300 1116 SUPERFAMILY Protein kinase-like (PK-like) 783 1081 IPR011009 -
Cca10g01300 1116 SMART serkin_6 807 1088 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01300 1116 Gene3D Ribonuclease Inhibitor 138 235 IPR032675 -
Cca10g01300 1116 Pfam Protein kinase domain 808 1078 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01300 1116 Gene3D Ribonuclease Inhibitor 34 137 IPR032675 -
Cca10g01300 1116 Gene3D Transferase(Phosphotransferase) domain 1 886 1099 - -
Cca10g01300 1116 SUPERFAMILY L domain-like 33 302 - -
Cca10g01300 1116 ProSitePatterns Serine/Threonine protein kinases active-site signature. 931 943 IPR008271 GO:0004672|GO:0006468
Cca10g01300 1116 Gene3D Phosphorylase Kinase; domain 1 770 885 - -
Cca10g01300 1116 ProSiteProfiles Protein kinase domain profile. 807 1088 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01300 1116 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 17 1093 - -
Cca10g01300 1116 PANTHER OS07G0152200 PROTEIN 17 1093 - -
Cca10g01300 1116 SMART LRR_typ_2 576 600 IPR003591 -
Cca10g01300 1116 SMART LRR_typ_2 240 264 IPR003591 -
Cca10g01300 1116 SMART LRR_typ_2 504 528 IPR003591 -
Cca10g01300 1116 SMART LRR_typ_2 552 575 IPR003591 -
Cca10g01300 1116 SMART LRR_typ_2 95 119 IPR003591 -
Cca10g01300 1116 SMART LRR_typ_2 360 383 IPR003591 -
Cca10g01300 1116 SMART LRR_typ_2 288 312 IPR003591 -
Cca10g01300 1116 SMART LRR_typ_2 408 432 IPR003591 -
Cca10g01300 1116 SMART LRR_typ_2 649 673 IPR003591 -
Cca10g01300 1116 SMART LRR_typ_2 168 192 IPR003591 -
Cca10g01300 1116 SUPERFAMILY RNI-like 365 688 - -
Cca10g01300 1116 Gene3D Ribonuclease Inhibitor 236 316 IPR032675 -
Cca10g01300 1116 MobiDBLite consensus disorder prediction 1089 1116 - -
Cca10g01300 1116 Pfam Leucine Rich Repeat 554 576 IPR001611 GO:0005515
Cca10g01300 1116 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01300 Cca-Chr10 17794703 17800257 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01300 52 1085 Receptor kinase-like Gene Family AT1G73080 37.201 0.0 615
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Cca10g01300 Pkinase 9.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01300 - - gmx:100818311 2020.74