Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01288 ATGGCTTCTAACGATCACCTCATAGCTCAGATCATGCAACTTCATGCAAGCATCTCCAAGCTTGAATCTCTCAAACCTTGCAAGCAAGTCAATAGTCTCTTCACACACCTAGTGAAACTATGCACCCTCCCTTCATCCATTGACATCGAGTCCTTGCCCCAAGAGGTGCAACACATGCGTGAGAGCCTCATCAACCTTTGTGGCGACGCTGAAACCCTCTTGGAGCTCGAATTCTCATCTTTCCTAATCCTCACACCCGAGCCAATGAAGAACGTGACCCTCTTCCCCTACTATGGAAACTACATCAAACTAGCACACTTGGAGAACAAAATCCTCAAGGAAAACGGGGTGGTGAACCCAAAGAAAGTGGCGTTTGTAGGGTCAGGTCCAATGCCACTAACTTCCATCATAATGGCCACACACCACATGCATTCCACGCACTTTGACAACTTCGATGTTGATCACAAGGCCAATGAGGTGGCACGCAAGATCGTGGCTTCTGATGTGGCACTTGAGAAGAGGATGAAGTTTGTGACGCAAGACATCGTGGACGTGAGAGAGAGGCTAGGGCAATATGATTGCATCTTTTTGGCAGCACTTGTGGGAATGAGAAAAGAAGAAAAAGTGAAGATTCTAGGGCACATGTGGAAGTACATGAAGGAAGGAGGGTTTTTGCTTGTGAGAAGTGCAAAAGGGGCTAGGGCTTTCTTGTACCCTGTGATTGAGGAACGTGACATGGTGAATTTTGAGGTTCTTGCCATGTTTCACCCCACAGATGATATCATCAACTCGGTTGTTCTTCTTCGCAAGCCTAAAGCTTAA 822 0.4684 MASNDHLIAQIMQLHASISKLESLKPCKQVNSLFTHLVKLCTLPSSIDIESLPQEVQHMRESLINLCGDAETLLELEFSSFLILTPEPMKNVTLFPYYGNYIKLAHLENKILKENGVVNPKKVAFVGSGPMPLTSIIMATHHMHSTHFDNFDVDHKANEVARKIVASDVALEKRMKFVTQDIVDVRERLGQYDCIFLAALVGMRKEEKVKILGHMWKYMKEGGFLLVRSAKGARAFLYPVIEERDMVNFEVLAMFHPTDDIINSVVLLRKPKA 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01288 273 CDD AdoMet_MTases 151 227 - -
Cca10g01288 273 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 273 IPR004298 GO:0030410|GO:0030418
Cca10g01288 273 PANTHER NICOTIANAMINE SYNTHASE 4 272 - -
Cca10g01288 273 Pfam Nicotianamine synthase protein 4 272 IPR004298 GO:0030410|GO:0030418
Cca10g01288 273 Gene3D Vaccinia Virus protein VP39 3 272 IPR029063 -
Cca10g01288 273 PANTHER NICOTIANAMINE SYNTHASE 3 4 272 IPR004298 GO:0030410|GO:0030418
Cca10g01288 273 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 110 229 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01288 Cca-Chr10 17618203 17619165 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01288 2 270 Nicotianamine Synthase Gene Family AT1G56430 49.451 4.29e-92 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01288 K05953 - gmx:100819726 464.151