Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01255 ATGCGGTTCGTCGGTTACATAGCGCAATGGAGAAGCGCGGCGAAGGAAGCTTTGGATCGCACCTCCATCGCTGTCAAATTCCTCTGCTGGCTTCACCTCACCAGCAACTACCTCTGTTCCCCATGTCACGCGTACGGGGTCAGCATGCTCCCCACGCTCAACGTCGCCGGCGACGTCCTTCTCGCCGACCACCTCTCGCCGCGGATCGGGAACATCGGCCACGGCGACTTGCTTGTGGTGCGGTCCCCTCTGAACCCTAAAATTAGGTTGACGAAGCGCGTCGTCGCCATGGAAGGGGACACCGTCACTTACTTCGACCCTAAGCACTCCGAGGAAGCTCAAGTTGCAGTGGTGTGTGTGCTTAATGGTGCCTAA 375 0.5867 MRFVGYIAQWRSAAKEALDRTSIAVKFLCWLHLTSNYLCSPCHAYGVSMLPTLNVAGDVLLADHLSPRIGNIGHGDLLVVRSPLNPKIRLTKRVVAMEGDTVTYFDPKHSEEAQVAVVCVLNGA 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01255 124 Pfam Signal peptidase, peptidase S26 24 106 IPR019533 GO:0004252|GO:0006465
Cca10g01255 124 CDD S26_SPase_I 46 100 IPR019533 GO:0004252|GO:0006465
Cca10g01255 124 PANTHER PEPTIDASE S24/S26A/S26B/S26C FAMILY PROTEIN 7 118 - -
Cca10g01255 124 SUPERFAMILY LexA/Signal peptidase 37 105 IPR036286 -
Cca10g01255 124 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 7 118 - -
Cca10g01255 124 Gene3D Umud Fragment, subunit A 35 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01255 Cca-Chr10 16636525 16641002 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01255 49 118 MADS-box Gene Family AT1G29960 43.662 2.29e-14 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01255 K09647 - csin:114274489 149.058