Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01251 ATGAAGAATTCCTTGGTTATAGCCTTTTCCATAACCATATGCTTCATCGCTTTTGTGATATCCAAGATTGTTATCTCAGTCCTCCTCTACAAAAGATGGAGAAGAAAACATATGATCCATGAAGAAGGTATGGAGGCAAAAAGGGGAGGGAAGATGGTAATATTTAGATCCTTATTGTCTAAATCTCTCACATCTGATGTGATCTTAAAGAAGACACAGAAACTGAACAACAAGGACATCATTGGATCAGGTGGTTATGGTGTGGTTTATGAACTAAAACTAGATGACTCCACAGCCTTGGCAGTAAAAAGACTAAACCGTGGAACTTCAGAGAGAGATAGAGGTTTTGAGAGAGAGTTGGAAGCAATGGCAGACATAAAGCACCGCAACATTGTGACTCTTCATGGATATTACACTGCACCACACTACAATCTGCTCCTATATGAGCTAATGGCTAATGGAAGTTTGGATTCCTTTTTGTATGGGAGATCAAAGGACAAGAAGGTTTTGGATTGGCCAACCAGATATAGAATAGCTGTAGGTGCAGCTAGAGGAATATCATATCTTCACCATGATTGCATCCCTCACATCATCCACAGAGACATCAAGTCAAGTAATATATTGTTGGATCAAAATATGGATGCCCGAGTTTCTGATTTTGGATTAGCCACGTTGATGCAACCAAATAAAACTCATGTCTCAACAATTGTGGCTGGAACTTTTGGATACTTGGCACCTGAATATTTTGATACAGGAAGAGCAACACTCAAAGGGGATGTTTACAGCTTTGGAGTTGTTTTGCTAGAGCTTTTAACAGGGAAAAAACCCAGTGATGAAGCATTTATGGAAGAGGGAACCATGCTGGTCACATGGGTGAAGGCTGTTGTTCGAGACAAGAAGGAGGAGTTAGTTCTTGATAACAGCTTAGGGTCTTGTTCAATGCAAGAGGTCAACAAGGTGTTCAACATGGCAATGATGTGTCTTGAACCAGATCCCTTGAAGAGGCCAACCATGGCTGAAGTTGTCAAACTACAAAATGAACTGAGAGATTTTAATATACACCATGACATGATTAAATTCCAATCCACCAAGTTGAATGTATCAGGACTAGGACCAACAAGAAGTAGCTTTGGTCAGAGAAGCACAGCATGCTTACATAGACATCAAGAGAATATAGGCCACAGCAAAACATTTAAAGACTGA 1203 0.4015 MKNSLVIAFSITICFIAFVISKIVISVLLYKRWRRKHMIHEEGMEAKRGGKMVIFRSLLSKSLTSDVILKKTQKLNNKDIIGSGGYGVVYELKLDDSTALAVKRLNRGTSERDRGFERELEAMADIKHRNIVTLHGYYTAPHYNLLLYELMANGSLDSFLYGRSKDKKVLDWPTRYRIAVGAARGISYLHHDCIPHIIHRDIKSSNILLDQNMDARVSDFGLATLMQPNKTHVSTIVAGTFGYLAPEYFDTGRATLKGDVYSFGVVLLELLTGKKPSDEAFMEEGTMLVTWVKAVVRDKKEELVLDNSLGSCSMQEVNKVFNMAMMCLEPDPLKRPTMAEVVKLQNELRDFNIHHDMIKFQSTKLNVSGLGPTRSSFGQRSTACLHRHQENIGHSKTFKD 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01251 400 PANTHER BNAA07G39120D PROTEIN 1 348 - -
Cca10g01251 400 ProSiteProfiles Protein kinase domain profile. 75 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01251 400 Pfam Protein kinase domain 77 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01251 400 SUPERFAMILY Protein kinase-like (PK-like) 57 343 IPR011009 -
Cca10g01251 400 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 348 - -
Cca10g01251 400 Gene3D Transferase(Phosphotransferase) domain 1 151 359 - -
Cca10g01251 400 SMART serkin_6 75 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01251 400 ProSitePatterns Protein kinases ATP-binding region signature. 81 103 IPR017441 GO:0005524
Cca10g01251 400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Cca10g01251 400 Gene3D Phosphorylase Kinase; domain 1 36 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01251 Cca-Chr10 16592507 16595110 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01251 5 344 Receptor kinase-like Gene Family AT2G35620 44.898 3.82e-95 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Cca10g01251 Pkinase 4.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01251 - - ahf:112703495 573.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01251 10 16592507 16595110 Cca10g01251 10 16592507 16595110 ECH