Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01241 ATGGAGGAGGAGGGAACCGAGAGGCGAAAGCAAGCCAGGCTTGCCATTATGGAACTCGCCAACATGATAAGCGTTCCCATGGCTCTAAACGCCGTCGTTCGCCTCAACGTAGCCGACGCCATCTGGCAGAACGGCGCCAACGCCCCCCTCTCCGCCGCTCAGATCCTCCCCCGCCTCCTCCCCCCCGCCGCCGGCGACGCCGAGAACCTCCAGCGCCTCCTCCGTATGCTCGCCAGCTACGGCGTCTTCCACGAGCACCTCGACGCCGGCGAACGGAAATTTTCCCTCACCGACGTCGGCAAAACGCTCGTCACCGATGGCGAAGGCCTGTCCTACGCGCCTTACGTGCTCCAACACCATCAGGACGCTTTGATGCGAGCGTGGCCGTTGGTGCACGAGGCAGTAGTGGACCCTACGAAGGAGCCCTTCGAGAGGGCGAATGGAGAGGCAGCATATGGGTACTACCTGAAGCAGCCAGAGATGAATGAGCTAATGTTAAGGGCCATGGCTGGGGTCTCAGTGCCCTTCATGAGGGCCATGCTCCTTGGCTATGATGGCTTTCGAGGGGTGCAGAAGCTGGTGGATGTGGGTGGCAGTGGTGGTGACTGCCTCCGTATGATCTTGCAAAAGCACCCTACAATCAAGGAAGGGGTGAACTTTGACCTACCTGAAGTTGTGGCCAAAGCACCACAGATTCCATGTGTAACCCATGTGGGTGGTGACATGTTCAAATTCATTCCCCAAGGAGATGCCATCTTCATGAAGTGGGTGCTAACAACATGGACAGATGAGGAATGCAAGCTGATAATGCAGAACTGTCACAAGGCACTGCCTGAGGGAGGAAAACTAATAGCTTGTGAGCCAGTGGTGCCAGAGAACTCAGATGAGAGTCACAGAACAAGGGCATTGCTTGAGGGTGACATATTTGTCATGACAATCTACAGAGCCAAGGGGAAGCACAGGACTGAAGAGCAATTCAAGAACCTAGCCATTGCTGCAGGTTTCCCTCGTTTCAAAGCCTTCCATGTCGATCATTTCTACACCGTCCTTGAGTTTCAGAAATGA 1065 0.554 MEEEGTERRKQARLAIMELANMISVPMALNAVVRLNVADAIWQNGANAPLSAAQILPRLLPPAAGDAENLQRLLRMLASYGVFHEHLDAGERKFSLTDVGKTLVTDGEGLSYAPYVLQHHQDALMRAWPLVHEAVVDPTKEPFERANGEAAYGYYLKQPEMNELMLRAMAGVSVPFMRAMLLGYDGFRGVQKLVDVGGSGGDCLRMILQKHPTIKEGVNFDLPEVVAKAPQIPCVTHVGGDMFKFIPQGDAIFMKWVLTTWTDEECKLIMQNCHKALPEGGKLIACEPVVPENSDESHRTRALLEGDIFVMTIYRAKGKHRTEEQFKNLAIAAGFPRFKAFHVDHFYTVLEFQK 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01241 354 PANTHER O-METHYLTRANSFERASE 6 353 IPR016461 GO:0008168
Cca10g01241 354 Pfam O-methyltransferase domain 132 335 IPR001077 GO:0008171
Cca10g01241 354 PIRSF O-mtase 1 354 IPR016461 GO:0008168
Cca10g01241 354 Gene3D - 1 108 IPR036388 -
Cca10g01241 354 PANTHER OS02G0823400 PROTEIN 6 353 - -
Cca10g01241 354 Gene3D Vaccinia Virus protein VP39 109 354 IPR029063 -
Cca10g01241 354 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 109 352 IPR029063 -
Cca10g01241 354 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 17 354 IPR016461 GO:0008168
Cca10g01241 354 SUPERFAMILY "Winged helix" DNA-binding domain 9 106 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01241 Cca-Chr10 16377440 16387145 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01241 1 354 Monolignol Biosynthesis Gene Families AT3G53140 73.538 0.0 556
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01241 - - gmx:100784957 653.669