Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01238 ATGGTACAGAGCCCCAGAACTGTGTGGCTCCTTCTTTTCAAAGGGAGGACTATTGATCTCTCCTGGAAGTTGATTTTATCTGTCCTTCAGTATACACCAGCAATTGATATATGGAGCATTGGATGCATTTTTGCAGAGGTGTTGACAGGAAAGCCACTGTTTCCTGGTAAAAGTGTAGTGCATCAATTAGATTTGATTACTGATCTTCTTGGGACACCATCACCTGAAACTGTTGCAGGAGTTCGAAATGACAAGGCAAGAAAGTACTTGATGGAAATGCGGAGGAAATCTCCTGTTCCATTTGAGCAGAAATTTCCTAATGCTGATCCATCGGCACTTCGTCTATTGCAAAGGCTTTTAGCATTTGATCCAAAGGATCGACCGACGGCTCAAGAGGCACTAGCTGATCCCTTCTTTAAGGGTTTGGCCAAAGTTGAAAGAGAACCTTCTTGTCAGCCAATTTCAAAATTGGAATTCGAGTTTGAGAGGAGACGAGTAACGAAGGAAGATGTTAGAGAACTAATATATAGGGAAATACTAGAATATCATCCTCAGTTGCTTAAAGATTACATGAATGGAACTGAAGGCACTCACTTCCTTTACCCTAGTGCAATAGATCAATTCAGAAAGCAATTTGCTTATCTCGAGGAAAATCATGGTAAAAATGGCCCAGTGATTCCTCCGGAAAGGAAGCATGTCTCCCTTCCAAGGTCCACTGTTCACTCTAGCACAATTCCTCCTACTACACAGCCACCTTTTGCTTCATATGATAACAAGCAAATGGCGCAAGAGGCATCAAAGATTTCGAGATCAGTAGACCCAAATTCTGGAAGTCAATTAAGGAGTTCGCGACCTCCACCTAGAGTACCAGCAGCGAAACCAGGTCGAATTGTAGGGCCAGTTCTGCACTATGACAATGGTAGAACCATAAAAGATGCTTATGACCAAAGGATCTTCTTCCGAAACACTCTTCCTCAAGCCATCTCTCCACACTGTTTCCATAGGGTGCAACCCTCTAACCAAAAAACTACATCAGAAACATACAAGGATGCTTCACAAGGCAAACATCAACTCCCATCACAGCAGTGTAACATGCCAGCCAGACCAGCTATTGATCTTAATACCAACCCATACTACCAACAAAGGAAGAGTGACCACTTAAATGATCCTGTTGCTTCTATTGATGCAAAACTGCTGCAGGCACAATCTCAATTTGGTGCAGTTGGTGCTGCAGCAGTGGCTGTTGCTGCTCATAGGCATTCAGGTAGCTTTCAGTACGGGTTGTCATAG 1290 0.4333 MVQSPRTVWLLLFKGRTIDLSWKLILSVLQYTPAIDIWSIGCIFAEVLTGKPLFPGKSVVHQLDLITDLLGTPSPETVAGVRNDKARKYLMEMRRKSPVPFEQKFPNADPSALRLLQRLLAFDPKDRPTAQEALADPFFKGLAKVEREPSCQPISKLEFEFERRRVTKEDVRELIYREILEYHPQLLKDYMNGTEGTHFLYPSAIDQFRKQFAYLEENHGKNGPVIPPERKHVSLPRSTVHSSTIPPTTQPPFASYDNKQMAQEASKISRSVDPNSGSQLRSSRPPPRVPAAKPGRIVGPVLHYDNGRTIKDAYDQRIFFRNTLPQAISPHCFHRVQPSNQKTTSETYKDASQGKHQLPSQQCNMPARPAIDLNTNPYYQQRKSDHLNDPVASIDAKLLQAQSQFGAVGAAAVAVAAHRHSGSFQYGLS 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01238 429 Gene3D Transferase(Phosphotransferase) domain 1 24 162 - -
Cca10g01238 429 Pfam Protein kinase domain 27 139 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01238 429 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 30 305 - -
Cca10g01238 429 ProSiteProfiles Protein kinase domain profile. 1 139 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01238 429 SUPERFAMILY Protein kinase-like (PK-like) 30 185 IPR011009 -
Cca10g01238 429 MobiDBLite consensus disorder prediction 219 296 - -
Cca10g01238 429 Gene3D Phosphorylase Kinase; domain 1 163 185 - -
Cca10g01238 429 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 19 30 305 - -
Cca10g01238 429 SMART serkin_6 1 139 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01238 429 MobiDBLite consensus disorder prediction 237 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01238 Cca-Chr10 16304270 16308961 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01238 30 426 MAP Kinase Gene Family AT1G53510 59.806 8.02e-147 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Cca10g01238 Pkinase 5.9e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01238 - K04371 gmx:100800878 713.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01238 10 16304270 16308961 Cca10g01238 10 16304270 16308961 ECH