Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01229 ATGCAAGCATCAATTGCATGCCGTCCTCGTGTTCATGGAGTTATCAAAGTGCAGTCACACACCAACCTTGTTCCACTCAAACCTGCCTATTCAACTCTGACTCGAACCAAATCAACTTCTGAGATCACACTCAGAAGCAATTCTCAACCTCAGTCAATGCTAAACCATAGCACATCAAAATCACCAAGAATAGGCGGTTCCAACGTTGGTCCACTTCAGTGTGGCATTTCGTCGAACGGGTACGGTGCAAATGAAGGTAGGAGTGTTGGGGAGTGGGTTGTGGTGGTTGGTGAGGTTCTTTCGACGGCATTTCCATTGTGGGTCTCAATTGGGTGTGTTTTGGGGTTGATGAAGCCAGATTTCTTCAATTGGGTCACTCCCAAATTGATAATCATGGGTCTGAATGTCATCATGGTTGGTATGGGTATGAGTCTGAGTGTTGATGATCTTCGTGGGGCTCTTGCAATGCCTAAGCAAGTTCTCTATGGTTTCGTCCTTCAGTATTCGGTGATGCCACTATCTGGATTTCTCATAAGCAAACTCTTAAATCTTCCATCACATTTTGCAGCAGGCTTAATACTAATTGGGTGCTGCCCAGGAGGCACAGCTAGTAACATTATAACATATCTAGCACGTGGAAATGTGGCGTTTTCTGTAATAATGACAACTGCAAGCACCCTAACTACCATGATCATGGCTCCTTTTCTGACAGCAAAACTTGCTGGTAAATATGTAGCAGTGGATGCATCTGGCTTATTGATTTCAACATTGCAAGTTGTGCTTTTCCCTGTGTTGGCTGGTGCATTTCTGAATCAGTTTTTCCAACCAATGGTTAAATTTGTGTCTCCATTGATGCCACCCATTGCTGTAACAACAGTGGCAATTTTAAGTGGAAATGCTATTGCCCAATGTTCTTCAGCAATCCTTGTGTCTGGTGGAAAAGTGATTTTAGCCACATTCCTTCTTCATGCTTCGGGCTTTTTCTTCGGTTATGTGTTTGCAAGAATGCTAGGGTTAGATGTGTCATCAGCAAGAACCATATCCATTCAGGTTGGCATGAAGAACTCAGTTCTTGGGATTGTTTTGGCTACGAAGCACTTTGGAGATCCTCTAACTGCAGTACCTGGTGCTGTTTCAATTGTGTTTCAGTCGATCATTGAGCAGATCATATGGGCTGGCCCAAAATGCATAGGCTGGGCCTGCATTGGTCCACAAATGGAGAGGGAGCAGAAGGTCAGAGCGAACGCCGCTAGATTGGGACACGCGAATGAGAATAGCATTGGGAGCCGCACGAGGCCTGGCGTTCCTCCACGTGTCAGCCAAACAGGTCCACGGCAACATCAAATCCTCCAACATCCTCCTCCACCCGAACCACGACCTCTGCGTTTCGGACTTCGGGCTGAACCGATATTCGCGAACCCGGTTCCCTCGAACCGGGTGGCAGGTTACCGGGCTCCGGAGGTTCTGGAAACCCGAAAGGTGACATTGAAATCCGACGTGTACAGCTTCGGCGTGCTGGTGCTGGAGCTCCTAACGGGCAAGGCGCCGAACCAAGCCTCGCTGAGCGAGAAAGGGATCGACCTTCCACGTTGGGTGCAGTCAGTGGTGCGCGAAGAGTGGACCGCGAAAGTGATCGACGCGGAACTCATGAGGTTCCAGAACATCGAAGAGGAGATGGTTCAGTTGTTGCAGATTGCCATGTCCTGCGTTGCGCTTGTGCTCGACCAGAGGCCCAACATGGATGAGGTGGTGCGCATGATTGGGGATATTGTTAGCCTCCCAATGGAATAG 1791 0.4846 MQASIACRPRVHGVIKVQSHTNLVPLKPAYSTLTRTKSTSEITLRSNSQPQSMLNHSTSKSPRIGGSNVGPLQCGISSNGYGANEGRSVGEWVVVVGEVLSTAFPLWVSIGCVLGLMKPDFFNWVTPKLIIMGLNVIMVGMGMSLSVDDLRGALAMPKQVLYGFVLQYSVMPLSGFLISKLLNLPSHFAAGLILIGCCPGGTASNIITYLARGNVAFSVIMTTASTLTTMIMAPFLTAKLAGKYVAVDASGLLISTLQVVLFPVLAGAFLNQFFQPMVKFVSPLMPPIAVTTVAILSGNAIAQCSSAILVSGGKVILATFLLHASGFFFGYVFARMLGLDVSSARTISIQVGMKNSVLGIVLATKHFGDPLTAVPGAVSIVFQSIIEQIIWAGPKCIGWACIGPQMEREQKVRANAARLGHANENSIGSRTRPGVPPRVSQTGPRQHQILQHPPPPEPRPLRFGLRAEPIFANPVPSNRVAGYRAPEVLETRKVTLKSDVYSFGVLVLELLTGKAPNQASLSEKGIDLPRWVQSVVREEWTAKVIDAELMRFQNIEEEMVQLLQIAMSCVALVLDQRPNMDEVVRMIGDIVSLPME 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01229 596 MobiDBLite consensus disorder prediction 424 456 - -
Cca10g01229 596 Gene3D - 91 392 IPR038770 -
Cca10g01229 596 SUPERFAMILY Protein kinase-like (PK-like) 482 586 IPR011009 -
Cca10g01229 596 Pfam Sodium Bile acid symporter family 132 296 IPR002657 GO:0016020
Cca10g01229 596 Gene3D Transferase(Phosphotransferase) domain 1 472 593 - -
Cca10g01229 596 MobiDBLite consensus disorder prediction 40 63 - -
Cca10g01229 596 PANTHER SODIUM/METABOLITE COTRANSPORTER BASS1, CHLOROPLASTIC-RELATED 35 390 - -
Cca10g01229 596 PANTHER SODIUM-BILE ACID COTRANSPORTER 35 390 IPR004710 -
Cca10g01229 596 Pfam Protein tyrosine and serine/threonine kinase 483 586 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01229 Cca-Chr10 16185988 16198409 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01229 31 395 Organic Solute Cotransporters AT1G78560 62.803 4.89e-158 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Cca10g01229 SBF 4e-37 CL0064
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01229 K03453 - gmx:100788639 585.874