Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01226 ATGGTTGGATTCCAGAGTGAGCATAACCCTGGGAATAAGTGCAATGGAGCGCTGACTCTTAGTGAGGGCCGCGTAAGGGAAGATGGAAAACCTTTCAGACAACGGCTTTTGGTGGTAGCCAATAGGCTGCCAGTCTCAGCAATTAGGAAAGGCGAGGATTCATGGTCTTTGGAGATAAGTGCTGGTGGCTTGGTGAGCGCTCTTTTAGGTGTGAATGAGTTTGAGACGAGGTGGATAGGTTGGGCTGGTGTCAATGTGCCAGATGAGATTGGACAAAAGGCACTTACAAAAGCTTTGGCCGAAAAGAGGTGTATCCCAGTGTTTCTTGATGAAGAGATTGTTCATCAATATTATAATGGCTATTGCAACAACATTTTGTGGCCCCTTTTTCATTACCTTGGACTTCCACAAGAAGACCGCCTTGCTACCACACGAGGTTTCCAATCTCAGTTTCAAGCATATAAGAAAGCAAATGAAATGTTTGCCGCCGTTGTAAACAAGCACTATGAAGAGGGTGATGTTGTTTGGTGCCATGATTACCATCTTATGTTTCTTCCACAATGCTTAAAGAATCATAACCGCAAAATGAAAGTTGGCTGGTTTCTGCATACCCCATTTCCATCTTCTGAAATTCACAGGACATTGCCATCTCGTTCAGACCTCCTGCATGCTGTTCTTGCAGCTGATTTGGTTGGTTTTCACACCTACGATTATGCACGGCATTTTGTTAGTGCATGTACTCGCATTCTTGGACTTGAGGGAACGCCTGAAGGGGTTGAGAATCAAGGGAAGCTGACTCGAGTTGCTGCATTTCCAATAGGTATAGACTCAGAACGCTTCATACGTGCACTTGACCTTCCTCAAGTCAAGACACACATCAAAAATTTACAAGAGAGATTTAAAGGAAGAAAGGTAATGTTAGGTGTGGATCGCCTTGATATGATTAAGGGAATCCCTCAAAAAATTCTAGCATTTGAAAAGTTTTTGGAAGAGAATGTTGGTTGGCATGAAAAAGTTGTTCTGCTTCAAATTGCCGTGCCAACAAGAACAGATGTTCCTGAGTATCAAAAGCTTACAAGCCAGGTCCATGAAATTGTTGGTCGCATCAATGGCCGGTTTGGAACACTGACTGCTGTTCCCATACATCACCTGGATCGCTCTCTTGATTTTTATGAACTATGTGGTTTGTATGCTGTTACAGATGTAGCACTTGTCACTTCTTTGAGGGATGGAATGAATCTAGTAAGTTACGAATTTGTGGCCTGCCAAGATAAAAAGAAAGGGGTTCTCATTCTTAGCGAATTTGCTGGTGCTGCACAGTCACTTGGTGCTGGAGCAATTCTGGTCAACCCTTGGAACATCACAGACGTAGCTGATGCAATTAAAAAGGCTCTGAATATGTCATCGGCAGAACGAGAGAAGAGGCATAAACATAACTTTCATCATGTAAAATCCCACACTGCTCAGGAATGGGCAGAAACTTTTGTAAGTGAACTAAATGATACTGTTGTTGAGGCACAGCTAAGGACAAAACAAGTTCCACCAGGGCTCCCAACCAAGACTGCAGTTGAACGTTATTTGCAGTCAAAAAACCGGTTGCTTATTTTGGGTTTCAATGGAACTCTAACTGAACCAGTTGAAAGAAAAGGTGATCAATATGATGAAACGGAACTCACAGTGCATCCAGAACTGAAACAACCCTTGGCAGAACTTTGCAGTGACCCAAAGACTACAGTTGTTGTGCTTAGTGGAAGCTGTAGGACAGTTCTAGATGAAAACTTCAAAGAATATGACATCTGGCTGGCAGCAGAGAATGGGATGTTTTTAAACCCTTCAAAGGGAGAATGGATGACAACAATGCCAGAGCAATTGAATATGGAATGGGTTGAAAGCGTGAAGCATGTTTTTGAGTACTTTACAGAAAGAACACCTCGATCACATTTCGAGGAAAGGGATGCTTCACTTGTATGGAGTTACAGACATGCAGATGTTGAGTTTGGAAGACTCCAAGCAAGGGACATGCTGCAGCATCTCTGGACAGGTCCAATTTCTAATGCATCAGTTGAAGTTGTTCAAGGGAGCCGATCTGTGGAGGTGCGAGCTGCTAATGTTACAAAGGGCGCAGCTATTGACCGCATTCTAGGTGAGATTGTCCACAGTAAATCCATGACAACACCAATTGATTACGTTCTATGTATAGGACATTTTCTGACTAAGGTAACTAATGAGAACTTGTGTTTGTTTTTCATGTCCTTTTGA 2259 0.429 MVGFQSEHNPGNKCNGALTLSEGRVREDGKPFRQRLLVVANRLPVSAIRKGEDSWSLEISAGGLVSALLGVNEFETRWIGWAGVNVPDEIGQKALTKALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRGFQSQFQAYKKANEMFAAVVNKHYEEGDVVWCHDYHLMFLPQCLKNHNRKMKVGWFLHTPFPSSEIHRTLPSRSDLLHAVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVENQGKLTRVAAFPIGIDSERFIRALDLPQVKTHIKNLQERFKGRKVMLGVDRLDMIKGIPQKILAFEKFLEENVGWHEKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFYELCGLYAVTDVALVTSLRDGMNLVSYEFVACQDKKKGVLILSEFAGAAQSLGAGAILVNPWNITDVADAIKKALNMSSAEREKRHKHNFHHVKSHTAQEWAETFVSELNDTVVEAQLRTKQVPPGLPTKTAVERYLQSKNRLLILGFNGTLTEPVERKGDQYDETELTVHPELKQPLAELCSDPKTTVVVLSGSCRTVLDENFKEYDIWLAAENGMFLNPSKGEWMTTMPEQLNMEWVESVKHVFEYFTERTPRSHFEERDASLVWSYRHADVEFGRLQARDMLQHLWTGPISNASVEVVQGSRSVEVRAANVTKGAAIDRILGEIVHSKSMTTPIDYVLCIGHFLTKVTNENLCLFFMSF 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01226 752 CDD GT20_TPS 35 500 IPR001830 GO:0003824|GO:0005992
Cca10g01226 752 Gene3D - 535 716 IPR023214 -
Cca10g01226 752 Gene3D Glycogen Phosphorylase B; 27 281 - -
Cca10g01226 752 TIGRFAM T6PP: trehalose-phosphatase 529 738 IPR003337 GO:0003824|GO:0005992
Cca10g01226 752 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 34 503 - -
Cca10g01226 752 Gene3D Glycogen Phosphorylase B; 282 485 - -
Cca10g01226 752 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 21 742 IPR001830 GO:0003824|GO:0005992
Cca10g01226 752 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 21 742 - -
Cca10g01226 752 TIGRFAM trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming) 35 500 IPR012766 GO:0003825|GO:0005992
Cca10g01226 752 SUPERFAMILY HAD-like 532 718 IPR036412 -
Cca10g01226 752 Pfam Trehalose-phosphatase 538 738 IPR003337 GO:0003824|GO:0005992
Cca10g01226 752 Pfam Glycosyltransferase family 20 35 500 IPR001830 GO:0003824|GO:0005992
Cca10g01226 752 Gene3D - 622 702 - -
Cca10g01226 752 CDD HAD_TPP 533 734 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01226 Cca-Chr10 16120583 16139510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01226 26 749 Trehalose Biosynthesis Gene Families AT1G78580 84.066 0.0 1293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01226 K16055 - gmx:100820010 1367.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01226 10 16120583 16139510 Cca04g01560 04 22707874 22729956 ECH
Cca10g01226 10 16120583 16139510 Cca10g01226 10 16120583 16139510 ECH