Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01224 ATGAAGATTCAGTGCAGCGTGTGTGAGGCTGCGGAGGCCAAGGTTCTGTGCTGTGCTGATGAGGCTGCTCTGTGTTGGGAGTGTGATGAGAAGGTTCATGCGGCTAACAAGCTCGCCAGCAAGCACCAGAGGGTGCCTCTTTCCACCTCTTCCTCTCATATGCCCAAATGTGACATTTGTCAGGAAGCATTAGGCTATTTTTTCTGCCTAGAGGACCGTGCTCTGCTCTGCAGAAAATGTGATTTGGCAATACACACTGCAAACGCTTATGTCTCTGGTCATCAGAGGTTTCTTCTAACTGGTGTAAGAGTAGGCCTTGAAGCTACGGAACTTGGTACTTCCTCAACTTCTTTGAAGACAGATTCTGGGGAGAAAATTTCAGACACAAAATCTTCTTCTGTCTCTAGAAAGGTTTCCACAGTGCCTCAGCCATCATCAGATTACAATGAAGTGTTACCCATTGAAGTTGGGGATTTTCCACCAGCTAAGGAATCTTTTGGTGGTGGTTCTACAGCTGGAAATATGTCACAGTGGACGATTGACGAATTTATGGGCCTAAACGATTTCAGTCAGAATTATGATTACATGGAAGGATCATCAAGGGCTGACTGTGGTAAGATTGGGGATTCTGGTTCTCCTGTTTTAAGATCAAGTGAAGAGGAAATGGAGGAAGATGATAACTATTTGGAACGCATTCCAGATTCGTCATGGACAGTTCCTCAAATTCCTTCACCACCTACAGCTTCTGGGTTATACTGGCCAAAAGACCCTCAATTTTCATCTGACAGTGTTCTTTCTGTTCCTGACATATGCTTCCCTCACATGCAACAACCTCAAAATAGAAGAATTTTTTCGAGACACCGGAGCCGGAGGCATCTCTAG 882 0.4512 MKIQCSVCEAAEAKVLCCADEAALCWECDEKVHAANKLASKHQRVPLSTSSSHMPKCDICQEALGYFFCLEDRALLCRKCDLAIHTANAYVSGHQRFLLTGVRVGLEATELGTSSTSLKTDSGEKISDTKSSSVSRKVSTVPQPSSDYNEVLPIEVGDFPPAKESFGGGSTAGNMSQWTIDEFMGLNDFSQNYDYMEGSSRADCGKIGDSGSPVLRSSEEEMEEDDNYLERIPDSSWTVPQIPSPPTASGLYWPKDPQFSSDSVLSVPDICFPHMQQPQNRRIFSRHRSRRHL 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01224 293 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Cca10g01224 293 MobiDBLite consensus disorder prediction 114 147 - -
Cca10g01224 293 MobiDBLite consensus disorder prediction 114 151 - -
Cca10g01224 293 SMART bboxneu5 52 99 IPR000315 GO:0008270
Cca10g01224 293 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cca10g01224 293 Gene3D Classic Zinc Finger 1 92 - -
Cca10g01224 293 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cca10g01224 293 CDD Bbox1_BBX-like 5 47 - -
Cca10g01224 293 PANTHER B-BOX ZINC FINGER PROTEIN 18 1 286 - -
Cca10g01224 293 Pfam B-box zinc finger 54 95 IPR000315 GO:0008270
Cca10g01224 293 CDD Bbox1_BBX-like 56 99 - -
Cca10g01224 293 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01224 Cca-Chr10 16058753 16062243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01224 1 288 C2C2-CO-like Transcription Factor Family AT1G78600 49.390 1.37e-91 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca10g01224 zf-B_box 9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01224 - - gmx:100790959 478.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01224 10 16058753 16062243 Cca10g01224 10 16058753 16062243 ECH