Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01222 ATGGATCTCAAGTTGTCAAACACGACTTTGGAATCCACAATAACTTCAAAGGTTTTAGCAACAATAGGAAAGTCGATTGTGACTTCTTTTGCATGGGAAGAGCTTGAGTTTATGGTCTTTTATGCCTTCACCAAGAATGATGGAGAAAAATTCCAATTAGCAGGTGCGATAGGCGGTGGCGTCATTTTGTGGAGAGCATCTTCGAAGTGGGCCTCCGACGGCCCGTCCATTGTTGTTGGTGGTAGTCCGCAATCGGTGCGAAGATTTGTTAGGTTTAACAGAATGGAGTTTGAGAATTCAAGTATAGAGGTAAGTGACATTTGTGTCATGTTTAGGATTGTGTCCTTCAATATTGCGTTGTGTCATGTGTTTCCTAACTGTGATGATGAAGATTTGCATTTAAGTCCCCATGAGCTTAGGAATGTTCAATTTGTAAGTGTTGAGATGGCTTACTTATTTTATTACTGGTTTGCAAGAGTTAATGGATTTGCCGCAAGAAAGAGCAAGATTTTGAGAAATATTAAGGGGGAAAAATTACAACAAACATTTGTTTGTTTCAAGGAAGGATTTAGAGATAACCGTGGTTTGAACATACAGAATCGAAAGCGAAAGCAAACACCGGAGACAAGGTGCGGATGTGAAGCAAAACTAAGAGTGCATATTGATAGCAGATGTGGACTATGGTACATTACATATTTTGTGGATGACCACAACCATAGTCTTTTGGAAGATAAGTATTGTAGAATGTTAGCTTCTCATAGAGATATGAGTGAGTTAGATATAATGCAGTTGAATAAAATGAGAAAAGTTGGCATAAGTAGTCCTCAAATTTATGGGTCACTTGCAGATCAGCCTGGAGGGTATGAGAGACTTTCTTTTTGTAAAAAGGACATATACAATCAAATTGGAAGGCAAAGAAGGTTGCAAGGTTTGGATTCAAAATGTGCGTTGGAATTTTTGAATGGTTTAAAACGCAGTGATCCTTTAATGTATGTTGGTCACACTGTTGATGAGGAAAACAGATTGCAACATTTGTTCTGGTGTGATGGCATGATGCAGATGGAGTATGAAGTTTTTGGTGATGTGTTAGCATTTGATGCAACCTATGGGAAAAATAAGTATTTATGTCCTGTAGTTGTATTTTCTGGTGTTAATCATCACAATCATACGATAGTATTTGGGAGTGCTATTGTTTCAAATGAAACTGTAGAAACATATATATGGGTACTTGGGCAATTTGTAGAAGCCATGAAAGGAAAGTCTCCAATGTCTATTATCACTGATGGTGATGTTGCAATGAAAAATGCGATAAGAAAGGTATTTCCTAATTCACAGCATAGATTGTGTGCATGGCACTTATTAAGGAATGCGACAACTAACATTAAGAAGCCAGCATTTACAAAGGATCTAAGAAAATGCATGTTGGGTGAGTATGAAATTGGTGAATTTCGAAAGAAGTGGTCTGAAATGTTGAACAAGTTTGAGTTTCATGATCATCCTTGGGTTATAGAGTTATTTGAAAAGAGGAAGATGTGGTGTACAACTTATATTAGAGGGGCTTTCTTTGCTGGTTTTAGGGCAACTTCTCGGTGTGAAGGATTACATTCTGAGTTGAAAAAATATATTCATCCGAAGATTAATCTCACGGAGTTTGTTCAACAATTTAATCGTCTTGTGAGTTATATGCGTTATAGGGAAGTTGAAGCTGACTTTGCATCAATTCATGGTGATCATGTTCCAGAAACAGATTTTCATAACCTTGAGCTATCGGGGGCAAAGTGTTATACGAAAGAAATATTCAAATTATTTCGTGATCAGCTTCATAGTTCATGTTTGATGAGGGTGATTGGTTGCAAGCAGACATTTGGTTGTTGTATATACATAGTGAGAAAATATGAAATGATTCACAAACAATGGCATGTGTCATATCAATCAACACCGTGTGATTTGAAGTGTTCATGCTTAAGAATGAAATCAGTTGGCATTCCATGTGATCATATACTTGCAGTGTTGGTTCATCTGAATTTATCAGAGTTACCAAAATGTTTGGTGTTAAAAAGGTGGACTAAGGTGGCGAAGGATGAAGTGAAGGGCAATGTTAGTACACGTAGGTGGGACTCTGAGAAAGATGCTAGATACTTGTCATTAATGGAGTATTTTAAAGAGCTTAGTACTTTGGCATGTGAAACATATGATGATTATGTTGATAAAAGGGATAAAGTTGTAAATGAATTAGTTGAAACAAGAGGTAAAAAAGGTCATGAATCTCAAGAAGGCAATGCATTGGGTGATGAATTAAGTGTAGTTATAAGAAATCCTGCCATTGCTAGAAGTAAAGGAAGGTCCGTTGTTGAAGGTTCATGGTGCAAAGTTGGTTCGACGACACAGAATGGTGAAACGATGTCACTTTATCTCTGTTTAGGAGGCCCCTTTGAACCGTTGGAATTCGTGAAAAACTGA 2460 0.3732 MDLKLSNTTLESTITSKVLATIGKSIVTSFAWEELEFMVFYAFTKNDGEKFQLAGAIGGGVILWRASSKWASDGPSIVVGGSPQSVRRFVRFNRMEFENSSIEVSDICVMFRIVSFNIALCHVFPNCDDEDLHLSPHELRNVQFVSVEMAYLFYYWFARVNGFAARKSKILRNIKGEKLQQTFVCFKEGFRDNRGLNIQNRKRKQTPETRCGCEAKLRVHIDSRCGLWYITYFVDDHNHSLLEDKYCRMLASHRDMSELDIMQLNKMRKVGISSPQIYGSLADQPGGYERLSFCKKDIYNQIGRQRRLQGLDSKCALEFLNGLKRSDPLMYVGHTVDEENRLQHLFWCDGMMQMEYEVFGDVLAFDATYGKNKYLCPVVVFSGVNHHNHTIVFGSAIVSNETVETYIWVLGQFVEAMKGKSPMSIITDGDVAMKNAIRKVFPNSQHRLCAWHLLRNATTNIKKPAFTKDLRKCMLGEYEIGEFRKKWSEMLNKFEFHDHPWVIELFEKRKMWCTTYIRGAFFAGFRATSRCEGLHSELKKYIHPKINLTEFVQQFNRLVSYMRYREVEADFASIHGDHVPETDFHNLELSGAKCYTKEIFKLFRDQLHSSCLMRVIGCKQTFGCCIYIVRKYEMIHKQWHVSYQSTPCDLKCSCLRMKSVGIPCDHILAVLVHLNLSELPKCLVLKRWTKVAKDEVKGNVSTRRWDSEKDARYLSLMEYFKELSTLACETYDDYVDKRDKVVNELVETRGKKGHESQEGNALGDELSVVIRNPAIARSKGRSVVEGSWCKVGSTTQNGETMSLYLCLGGPFEPLEFVKN 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01222 819 PANTHER OS02G0262500 PROTEIN 139 757 - -
Cca10g01222 819 Pfam SWIM zinc finger 649 675 IPR007527 GO:0008270
Cca10g01222 819 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 139 757 IPR031052 GO:0006355
Cca10g01222 819 SMART 26again6 650 677 IPR006564 GO:0008270
Cca10g01222 819 Pfam MULE transposase domain 362 456 IPR018289 -
Cca10g01222 819 Pfam FAR1 DNA-binding domain 153 242 IPR004330 -
Cca10g01222 819 ProSiteProfiles Zinc finger SWIM-type profile. 639 675 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01222 Cca-Chr10 16024787 16036120 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Cca10g01222 MULE 2.3e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01222 - - ccaj:109791994 1333.16