Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01209 ATGACTTTCCCTCCACTCTTCCATCTTTGGTTTCTTTCCTTTTGTTTGATCTTTTCTTTTGCTAGGGGAGCTACTCTGTCAGAAGATGAAGTGCAAATTATGAAGGAGATAGGTAAGACACTTGGGAAGAAGGATTGGGATTTCAGTGTGGATCCATGCAGTGGAGAAAGTAATTGGACTTCATCTGTTCAAGTAAAGGGATTTGAAAATGCTGTTACCTGCAATTGCCTTTTTGCCAATGCCACTATCTGCCATGTTGTTAGCATTGTTCTCAAGTCACAAAATCTTTCGGGCACACTCCCTAGTGAACTAGTGAGATTGCCATATCTCCAAGAAATTGACCTCTCTCGCAACTACCTTAATGGTACAATCCCTCGAGAATGGGGTTCCATGAAACTTGTCAACATTTCCATTCTTGGAAATCGGCTAACAGGTCCAGTCCCAAAAGAATTAGGAAACATCACCACCCTGAAGAGTTTGGTCCTAGAGTTCAACCAATTATCTGGTGTGCTTCCTCCAGAGCTTGGGAATCTCCCCCAGCTTGAAAGACTGCTTCTTACATCCAATTATTTTACTGGAAATTTACCTGCAACATTTGCTAGGCTCACTACATTAAAGCACCTTCGACTTGGTGACAATCAATTCTCTGGAACTTTACCTAATTTCATTCAGAGTTGGACAAGTCTAGAGAGACTGGTGATGTATGGGAGTGGTTTTAGTGGGCCAATTCCTTCTGGAATTGCATTTCTCAACAACCTCACAGACTTGAGAATTAGTGACTTGAAAGGACCAGATTCTCAATTTCCTCCACTTAAAAACTTGACAAATTTGCAATCACTAATACTAAGGAGTTGCAATCTTATAGGAACGGCTCCTGAATATCTTGGAAATATAACTAGTTTACGATCATTAGACCTCAGTTTTAACAAATTGACTGGACAGATTCCGAGAACCTTGGGTGGCCTAAACGATATAAATTTATTATATTTAACTGGAAACAATTTTACTGGACCATTGCCCAATTGGATAGATAGGCCAGATTACACAGATCTCTCATATAACAATTTAAGCATTGACAACCCAGAAGAGTTGACTTGTCAACAGGGAAGCTTATGCCTGCTCCATTATTTTCTCAGGAGAACGATTCCATGTTTGGGGAACAATAATTGTCCTAAAACTTGGTACTCTCTCCATATAAATTGTGGTGGAAAGTTAATTTCTAAAGGAAACATGGTATATGATGATGATTCACAAGAAGCTGGACCAGCGAGATTTCGTCGAAGTGAATCAAATTGGGTGTTTAGCAACACTGGTCATTTCTTTGATAGCAGTCGTGTAGACTATTATACATGGTCTAATACAACTAAGCTTGCAATGGATAATGCCGAATTGTACATGGATGCACGTGTTTCTGCCCTTTCTCTCACATATTATGGATTTTGCATGGGAAATGGAAGCTACACAATAAGCCTTCATTTTGCAGAAATAATGTTCACTGATGATCAAACATATAGCAGCCTTGGAAGGCGTGTATTTGACATCTATATTCAGAGAAAGTTAGTGCTGAAGGATTTCAATATTGCAAAAGAAGCAGGTGGAGTTGGTAGGGCAATCATAAAAAGGTTCACTACTATTGTGAATAGTAGTACCTTGGAGATCCACTTTCAATGGGCTGGGAAAGGCACAACTGCTATCCCATTTGGATCAGTTCATGGCCCTCTTATATCAGCTATATCTGTTGATCCTGACTTCAAACCCCCAGTGGAAAATGAAGGTGGCCATGACATACCTGTGCAGTCTATTATTGCAATAGTAGTTGCTGGAGTGCTTATTATCATCATAGCATTTGGTATAGCTTGGTGGAAAGGATGTCTAAGACAAAAGTTTTCATTACAAAAAGAGTTAAGGGACGTGGATTTGCAAACTGGCTTATTTAGCTTACGACAAATCAAAGCTGCAACTAAAAACTTTGATATAGCCTTTAAGATTGGAGAAGGAGGATTTGGTCCTGTTTACAAGGGTGTTCTTTCAGATGGTACAATAATTGCAGTTAAACAACTTTCTTCTAAATCAAAGCAAGGAAATCGCGAGTTTATAAATGAGATTGGCATGATTTCTGCTTTGCAACATCCTTGTCTAGTTAAGTTATATGGTTGTTGTATGGAGGGAGATCAATTAATGCTAATATATGAATACATGGAAAACAACAGTCTTGCTCGTGCTTTATTTGCTAAAGAAAAATGTCAATTGAAGTTGGATTGGTCAACAAGGCACAAAATTTGTGTTGGTATTTCTAAAGGTTTGGCTTACCTTCATGGAGAGTCAAGGTTGAAGATAGTTCATAGAGACATCAAGGCGACTAATGTTTTATTGGATAAAGATCTTAATCCTAAGATATCTGATTTTGGTTTGGCCAAATTGGATGAAGAGGGTTATACCCACATAACCACCAGAATAGCTGGCACCTATGGATATATGGCTCCTGAATATGCAATGCATGGTTATTTGACCGACAAAGCAGATGTTTATAGTTTTGGTATTGTTGCATTGGAAGTCGTTAGTGGAAAAAGTAACTCCATGAATTGGCCAAAAGAAGGGTGTTTTTCCCTTGTTGATTGGGTGCATCTGTTGAAAGAAAATGGTAATTTGATGGACCTAGTTGATGAAAGGTTAGGTAAAGACTTTAAAAAGGATGAAGTGATGGTCATGATAAATGTTGCTCTTCTATGCACACAAGTTTCTCCACTGCATAGACCCACCATGGCTTCAGTGGTATGCATGCTTGAAGGCAAAATTGATGTTCAAGATGTATTGTCAGAAACAAGCCAAGTATTAGATGGAAAGAATTTGGAGGTAATCCAACAATATTATCAAATGACAGAAAAGAATAAGACTTGTGATACTCAAGAAGAGAGCATCTCGATGGGTGAAACTTCAGCATTTATGTCTGACACAGATCTATATTCTATCAACATGGATTCTTCTTACCAGGAGAAAAGTAATTAG 3006 0.3849 MTFPPLFHLWFLSFCLIFSFARGATLSEDEVQIMKEIGKTLGKKDWDFSVDPCSGESNWTSSVQVKGFENAVTCNCLFANATICHVVSIVLKSQNLSGTLPSELVRLPYLQEIDLSRNYLNGTIPREWGSMKLVNISILGNRLTGPVPKELGNITTLKSLVLEFNQLSGVLPPELGNLPQLERLLLTSNYFTGNLPATFARLTTLKHLRLGDNQFSGTLPNFIQSWTSLERLVMYGSGFSGPIPSGIAFLNNLTDLRISDLKGPDSQFPPLKNLTNLQSLILRSCNLIGTAPEYLGNITSLRSLDLSFNKLTGQIPRTLGGLNDINLLYLTGNNFTGPLPNWIDRPDYTDLSYNNLSIDNPEELTCQQGSLCLLHYFLRRTIPCLGNNNCPKTWYSLHINCGGKLISKGNMVYDDDSQEAGPARFRRSESNWVFSNTGHFFDSSRVDYYTWSNTTKLAMDNAELYMDARVSALSLTYYGFCMGNGSYTISLHFAEIMFTDDQTYSSLGRRVFDIYIQRKLVLKDFNIAKEAGGVGRAIIKRFTTIVNSSTLEIHFQWAGKGTTAIPFGSVHGPLISAISVDPDFKPPVENEGGHDIPVQSIIAIVVAGVLIIIIAFGIAWWKGCLRQKFSLQKELRDVDLQTGLFSLRQIKAATKNFDIAFKIGEGGFGPVYKGVLSDGTIIAVKQLSSKSKQGNREFINEIGMISALQHPCLVKLYGCCMEGDQLMLIYEYMENNSLARALFAKEKCQLKLDWSTRHKICVGISKGLAYLHGESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLDEEGYTHITTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEVVSGKSNSMNWPKEGCFSLVDWVHLLKENGNLMDLVDERLGKDFKKDEVMVMINVALLCTQVSPLHRPTMASVVCMLEGKIDVQDVLSETSQVLDGKNLEVIQQYYQMTEKNKTCDTQEESISMGETSAFMSDTDLYSINMDSSYQEKSN 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01209 1001 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 375 972 - -
Cca10g01209 1001 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 74 288 - -
Cca10g01209 1001 Pfam Leucine rich repeat 275 335 IPR001611 GO:0005515
Cca10g01209 1001 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 375 972 - -
Cca10g01209 1001 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 287 342 - -
Cca10g01209 1001 Gene3D - 394 582 - -
Cca10g01209 1001 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 287 342 - -
Cca10g01209 1001 ProSitePatterns Serine/Threonine protein kinases active-site signature. 779 791 IPR008271 GO:0004672|GO:0006468
Cca10g01209 1001 Pfam Protein tyrosine and serine/threonine kinase 662 926 IPR001245 GO:0004672|GO:0006468
Cca10g01209 1001 Pfam Malectin domain 396 578 IPR021720 -
Cca10g01209 1001 Gene3D Ribonuclease Inhibitor 40 188 IPR032675 -
Cca10g01209 1001 Gene3D Phosphorylase Kinase; domain 1 623 732 - -
Cca10g01209 1001 Gene3D Transferase(Phosphotransferase) domain 1 733 948 - -
Cca10g01209 1001 SMART serkin_6 657 928 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01209 1001 Gene3D Ribonuclease Inhibitor 189 393 IPR032675 -
Cca10g01209 1001 ProSiteProfiles Protein kinase domain profile. 657 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01209 1001 SUPERFAMILY L domain-like 78 356 - -
Cca10g01209 1001 SUPERFAMILY Protein kinase-like (PK-like) 642 929 IPR011009 -
Cca10g01209 1001 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 74 288 - -
Cca10g01209 1001 CDD STKc_IRAK 663 930 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01209 Cca-Chr10 15719631 15729833 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01209 17 984 Receptor kinase-like Gene Family AT1G53420 54.192 0.0 1015
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca10g01209 PK_Tyr_Ser-Thr 7.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01209 - - gmx:100786496 1744.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01209 10 15719631 15729833 Cca10g01209 10 15719631 15729833 ECH