Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01207 ATGTTAATCAACATGAAGACCACCATTTCCTCTCAACTTTTCCTCCTTTCACTTCTTCCCATTTGCTTCACATGCCTTGCTTTTGGAGCCACCATGCTGCCACAAAATGAAGTGCTAGCGTTGAAGGATATAGCTAAAACACTTGGTAAGAATGAGGGTTGGGACTTCAATGTAGATCCATGCAGCTGGAACAGCACTTCTACCCATGAAGAAATGGCCGATATGGTTATTTGTAATTGCAAAGTGCCCAATGACAGCTTCTGCCATGTTGAGAAAATAGCTCTAAAGTCACAAAATCTTCAAGGCAGTCTACCCCCACAACTGATCAGATTACCCTATCTCCAAGAGATTGAACTAAGCCGCAACTACCTTAGTGGTACAATTCCCAAAGAATGGGGCACTTCCAACCTTCGAAAAATTTCTCTTCTTGGAAACAGACTCACTGGTCCAATCCCAAGAGAGTTGGCAAACCTCACCAATCTTACACGCTTGATCCTTGAGTTCAATCAATTCTCTGGAAATCTTCCTCCAGAACTTGGGAATCTTGCCCACATTGAAAAACTGCATTTAAGCTCCAATAACTTCACTGGTCAATTGCCAGCAACTCTTGCGAGGCTTACTACAATGAAGGAATTTCGAATTAGTGACAACCAGTTCTCTGACAACATACCTAATTTTATTCAAAATTGGACAAGTCTTGAGCAATTATATATGCAAGGGACTGGTTTAAGTGGACCAATTCCCTCACTAATTTCACTTCCAAACTTAACCGACTTGAGGATTAGTGACTTGAATGGACCTGATTCAACTTTTCCACAACTTAATATGACTGCACTGACAACACTGATATTAAGGAGTTGCAATATCAATGACACATTGTCTAAATTTCTTCAAAAACCCCTGGCTTTACACATTTTAGACCTTAGCTATAACAAGTTAAATGGACAAGTATCGACAAACCTTAAAGATTTAACAACACAAGCAACCTACATATATTTAACAGGAAACTTTCTCACTGGAGCAGTGCCTGAGTGGACAAGCGACAATAATAGAAATTTAGATCTCTCGTATAACAACTTCAGTATTGAAAACCCAGAGTCAAAGACTTGTTACAAGCAAAATGTGAACTTGTTTGCAAGCTTTTCAAGGAATAATAACTTAGGACCAGTTTCTTGTGAAAGCAACAATAGATCATGTCCTAAATATGTTAAATCATTGCATATAAATTGTGGTGGAAAACAAACTACTATTCAAGGTATAACATATGATGAAGATATAGATCCAGCTGGACCAGCAGTATATAAACAGAGTAGAAATAACTGGGCATTTAGCAACACAGGTCACTTCATGGACAATGATACTAACGAACGAGAACAACCTTTACCCTACACCACAGATAATGAATCTATGCTTTATATGACTGATGCTGAATTATATATGAATGCACGTATATCTCCCATGTCTTTGACTTATTATGGATTTTGCTTGGAAAATGGAGACTACACAGTAAAGCTTCACTTTGCTGAGATAATGTTCACTGATGATAGCACATATAGAAGCTTAGGGAGACGTCTATTTGATGTATACATTCAGGGAAAAAAAGTATTGGAGGATTTCAATATTGCAAATGAAGCACATGGAGTTGGCAAGGAATGCATAAAACAATTTCCAGCTCATGTGAGTAGTAACGACTTGGAGATTCGCTTCTATTGGGCTAGCAAAGGGACAACATATATCCCATACAAATCAGTAAATGGTCCTCTTATATCTGCCATTTCTGTTGAGAATGACTCTACAAGTAGCATATCTGTAGGAGTTATTGTTGCAATTATAGCTGCATTTGTGATTGTTATCACCTTGATTGTTATTGGCGTACTTTGGTGGAGGCGTTTCATAGGAAAGAAGTATTTATTAATGAAAGAGCTAAGAGATTTAGATCTACAAACTAGTTTATTTACTTTACATCAAATCAAAACTGCAACAAATAACTTTGATATTTTGAATAAGATTGGAGAAGGAGGTTTTGGTCCTGTTTATAAGGGCATTCTATCAAACAACACAACAATAGCAGTCAAACAACTTTCATCTACATCGGAGCAAGGAGCCCATGAGTTTATAAATGAGATTGGCATGATTTCTACTTTGCAACACCCTAATCTTGTTAGACTTTATGGATGCTGTGTTGAAGGAGATCAATTGTTATTGGTATATGAATATATGAAAAATAATAGCCTTGCACATGCTTTGTTTGGCCCAAGATATAGCCATTTAAAATTGAATTGGCAAACAAGGCAAAAGATTTGTGTTGGTATTGCAAGAGGCTTAACATTCCTACACGAACAACCAAGACTGAAAGTTGTTCATAGGGACTTAAAGACTTCTAATATATTACTTGATGAAGACCTAAATCCAAAGATATCCGATTTTGGTTTGGCTAGGCTTCATGGAGGAGACAATACTCACATAAGCACCAAAATTGCAGGGACTTGGGGATATATGGCTCCTGAGTATGCATTGCATGGTTTTCTAACTGACAAAGCAGATGTTTATAGTTTTGGTGTTGTTGTCTTGGAAATTATAACCGGAAAGAGAAACATTATTCACCGTTTAAAGGAAGAATCATTTGACCTTCTTGATTGGGCACGATTGTTAAAAGATAAAGGTAATATATTTGATCTAGTTGATCCAAGGTTGGGTTCAACTTTCAATGAAAAAGAGGTAATGTTGATGGTCAAAGTGGTTCTCCTATGCACTAATGTCTCTTCAAACCTTAGACCCAACATGTCTTCTGTACTTAGTATGCTTGAGGGAGCATTAGTGGTCCCAGAATTTGTTGCACATACAACTGAGGAAATGGATGAAATAAAATTGGAGCTAATGAGAGACTTTTACAATCAAATGGAAAACAATAAAATAAGTGAGTCACGAAGATTGAGTATGACAATCAATATTGCATGGACTGCCTCATCTTCTTCAATTGTAGACCTCAATCCAACTCAATCTGATTCTTCCTATTGGGAAAAAAATAATTAG 3033 0.3703 MLINMKTTISSQLFLLSLLPICFTCLAFGATMLPQNEVLALKDIAKTLGKNEGWDFNVDPCSWNSTSTHEEMADMVICNCKVPNDSFCHVEKIALKSQNLQGSLPPQLIRLPYLQEIELSRNYLSGTIPKEWGTSNLRKISLLGNRLTGPIPRELANLTNLTRLILEFNQFSGNLPPELGNLAHIEKLHLSSNNFTGQLPATLARLTTMKEFRISDNQFSDNIPNFIQNWTSLEQLYMQGTGLSGPIPSLISLPNLTDLRISDLNGPDSTFPQLNMTALTTLILRSCNINDTLSKFLQKPLALHILDLSYNKLNGQVSTNLKDLTTQATYIYLTGNFLTGAVPEWTSDNNRNLDLSYNNFSIENPESKTCYKQNVNLFASFSRNNNLGPVSCESNNRSCPKYVKSLHINCGGKQTTIQGITYDEDIDPAGPAVYKQSRNNWAFSNTGHFMDNDTNEREQPLPYTTDNESMLYMTDAELYMNARISPMSLTYYGFCLENGDYTVKLHFAEIMFTDDSTYRSLGRRLFDVYIQGKKVLEDFNIANEAHGVGKECIKQFPAHVSSNDLEIRFYWASKGTTYIPYKSVNGPLISAISVENDSTSSISVGVIVAIIAAFVIVITLIVIGVLWWRRFIGKKYLLMKELRDLDLQTSLFTLHQIKTATNNFDILNKIGEGGFGPVYKGILSNNTTIAVKQLSSTSEQGAHEFINEIGMISTLQHPNLVRLYGCCVEGDQLLLVYEYMKNNSLAHALFGPRYSHLKLNWQTRQKICVGIARGLTFLHEQPRLKVVHRDLKTSNILLDEDLNPKISDFGLARLHGGDNTHISTKIAGTWGYMAPEYALHGFLTDKADVYSFGVVVLEIITGKRNIIHRLKEESFDLLDWARLLKDKGNIFDLVDPRLGSTFNEKEVMLMVKVVLLCTNVSSNLRPNMSSVLSMLEGALVVPEFVAHTTEEMDEIKLELMRDFYNQMENNKISESRRLSMTINIAWTASSSSIVDLNPTQSDSSYWEKNN 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01207 1010 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 77 973 - -
Cca10g01207 1010 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 77 973 - -
Cca10g01207 1010 Gene3D - 405 598 - -
Cca10g01207 1010 Pfam Protein kinase domain 665 869 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01207 1010 SUPERFAMILY L domain-like 84 324 - -
Cca10g01207 1010 SMART serkin_6 664 935 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01207 1010 ProSitePatterns Serine/Threonine protein kinases active-site signature. 786 798 IPR008271 GO:0004672|GO:0006468
Cca10g01207 1010 Gene3D Transferase(Phosphotransferase) domain 1 740 954 - -
Cca10g01207 1010 Pfam Malectin domain 405 592 IPR021720 -
Cca10g01207 1010 ProSiteProfiles Protein kinase domain profile. 664 945 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01207 1010 CDD STKc_IRAK 670 937 - -
Cca10g01207 1010 Gene3D Ribonuclease Inhibitor 35 188 IPR032675 -
Cca10g01207 1010 Gene3D Phosphorylase Kinase; domain 1 634 739 - -
Cca10g01207 1010 SUPERFAMILY Protein kinase-like (PK-like) 648 946 IPR011009 -
Cca10g01207 1010 Gene3D Ribonuclease Inhibitor 271 379 IPR032675 -
Cca10g01207 1010 Gene3D Ribonuclease Inhibitor 189 270 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01207 Cca-Chr10 15611957 15641742 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01207 30 981 Receptor kinase-like Gene Family AT1G53420 50.881 0.0 935
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca10g01207 Pkinase 5.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01207 - - gmx:100791136 1484.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01207 10 15611957 15641742 Cca10g01207 10 15611957 15641742 ECH