Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01206 TGTCTAGTCATAAAATTAGCAATAGCAAGCATGAGGATAAGTTACCATCGTTTCTTCTTCCTTTTTCTCCTTGCTGCCTTTTGCTTTGCTTCCTTAGCCTCTGGTGCCACTCTGGCCATAGATGAAGTGGAAGCTCTGAAAGATATAGGGAAGATACTTGGAAAGAAGAACTGGGATTTCAGCGTAGATCCATGCAGTAAAGAACGTAATTGGACATCACCAAATCAAACCAAAGATAACGCAAATGAAGTCAGATGTAATTGTTCCATCGGCAATGATACAGTCTGTCATGTTACCAACATACTTTTGAAGCAACAAAATCTCCCAGGCACTCTCCCGCGGGATCTGTTCAGGTTCCCTTACCTTCAAGAAATTGACCTTACTCGCAACTACCTGAACGGTACAATTCCTAAAGAATGGGGCTCCACAAAACTTGTCAACATTTCCCTCCTTGGAAATCGATTAACGGGTTCAATACCAGTGGAGATAGCAAACATATCCACTCTTCAAAGTTTGGTCTTGGAGGGTAATCAACTGTCTGGAAAACTTCCTCCTGAGCTTGGAAATCTAACCCAAATTCAAAGACTGCACCTTATCTCCAACAATTTTACTGGAGAGCTACCAGTAACATTGGCCAAGCTTACTACATTGCGAGAGTTTCGAATTGGGGACAATCAGTTCTCTGGGAAGATACCTGATTTTATTGAAAGCTGGACTAGTCTCCATAAACTAGTGATTCAAGGGAGTGGATTAAGTGGGCCAATTCCTTCTGGAATTTCATTGCTAGAAGACTTAACTGACTTGAGAATTAGTGATCTGGATGGATCTGAACATTCACCTTTTCCACAACTTAATAAAATGAAGTTGAAATATCTGATTCTGAGGAATTGCAACATCAATGGAACACTGCCTTATTATCTTGGGACAATGACATTACCAGATTTGCAAAACTTAGACCTCAGCTTTAACCAACTGACTGGACCAATTCCGAGTACCTATAGTGCCTTAAGCCATGTCAATTACATATATTTAACTGGAAATCTTCTCACGGGACCAGTGCCTTCATGGGCAGAAAAAGCTAAAAGCTTAGATATTTCGTATAACAACTTCAGCATCACAAGCCAATGGAATGAGACATGTCAGAATTTAAATGTGAACTTGTTTGCTAGCTCTATGACGCGCAATGACTCGCGACCGGTTGCATGTTTGGGAAGCTATATCTGTCCAAAAAAGTTATCATACTATCTTCATATAAATTGTGGTGGCAAGTTGGTTACTGTCAATAGAAGCAGATATGACGATGATTTAGAGAATGGAGGTCCATCTAGATTTCAATGGAGTGGAACAAAAAACTGGGAAATTAGCACGACCGGAAATTTTCTAGACAATGGTGGTGTAGAGTACTATAAGTCGTCAAATAAATCTTTGCTTTCTATGGACAATGCTGACTTGTACATGGATGCACGAGTTTCTCCCATTTCTCTGACTTATTTTGGATTTTGCCTGGGAAATGGAAACTACACAGTAAAACTACATTTTGCTGAAATCATGTTCATTGATGATCAAACATTTAATAGCCTAGGAAGGCGAGTATTTGACATCCACATTCAGGGAAAGCTGGTGCAGAAGGACTTCAATATTGTAGAAGAAGCAGGAGGAATCGGGAAAGGGACAACTAGTCTTCCATATAGATCAGTATATGGTCCTCTTATATCAGCTATATCTGTGGAACCTGACTTCAAACCTCCCTCGGAAAAAGAAAGAATATCTGCAGGAGTTGTGGTTGGAATTGTAGCACTAGGAGCAGTTGTTATCATCCTTGTATTTGGTCTACTTTGGTGGAAAGGTTGTGTAGGAAAGAAAAGTTCCTTAGAAAAAGAGTTAAAGAGCTTAGACCTACGAACAGGTTTATTTTCTTTAAGACAAATCAAAGTAGCAACTAACAACTTTGATGTTGCCAATAAAATTGGAGAAGGAGGATTTGGTCCTGTGTACAAGGGATGTTTATCAGATGGGACATTAATAGCAGTCAAGCAACTTTCTTCTAAATCAAAACAAGGGAATCGTGAGTTTTTAAATGAGATAGGCATGATTTCTGCTTTGCAACATGTTCATCTAGTTAAACTCTATGGATGTTGTGTGGAGGGAGACCAACTATTGTTAGTATATGAATACATGGAAAATAATAGCCTTGCTCGTGCTTTATTTGGCCCCGAAGAACACCAAATAAAATTGGACTGGCCAACAAGATACAAGATTTGTGTTGGTATTGCTAGAGGTTTGACATATCTCCATGAAGAATCAAGACTAAAGGTTGTTCATAGGGATATCAAGGCTACTAATGTATTGCTTGATAAAGATCTCAATTCAAAGATATCTGACTTTGGTTTGGCTAAGCTTGATGAAGAGGATAACACTCATATTAGCACTCGAATAGCTGGGACATATGGATATATGGCTCCAGAATATGCCATGCATGGGTATTTGACTGACAAAGCAGATGTTTATAGCTTTGGAATTGTTGCCTTAGAAATCATAAATGGAAGGAGTAATACCATTCATCGACAAAAAGAAGAATCATTCTCTATTCTTGAATGGGCACATCTGTTGAAAGAGAAAGGTAATCTAATAGATCTAGTTGATAGAAGATTAGGTTCAAACTTCAACAAGGAGGAGGCATTGGTGATGATCAAGGTGGCTCTCTTATGCACTAATGTGACTGCGGCACTTAGGCCAACAATGTCATCAGTGGTAAGCATGCTAGAAGGAATAACTGTTGTTGAGGAAGTGGCATCAGAGACAAGTGAGGTATTGGATGAGAAGAAGTTGGAGGCAATGAGATTGTATTACCAGGAACTTGTTATGTCAAATGAAGAGCCATGGACTGCTTCATCTACTTCTGTATCAGATCTTTATCCTGTACGCATGGATTCTTCTTATTGGGAGAAGAGAAATTAG 2958 0.3922 CLVIKLAIASMRISYHRFFFLFLLAAFCFASLASGATLAIDEVEALKDIGKILGKKNWDFSVDPCSKERNWTSPNQTKDNANEVRCNCSIGNDTVCHVTNILLKQQNLPGTLPRDLFRFPYLQEIDLTRNYLNGTIPKEWGSTKLVNISLLGNRLTGSIPVEIANISTLQSLVLEGNQLSGKLPPELGNLTQIQRLHLISNNFTGELPVTLAKLTTLREFRIGDNQFSGKIPDFIESWTSLHKLVIQGSGLSGPIPSGISLLEDLTDLRISDLDGSEHSPFPQLNKMKLKYLILRNCNINGTLPYYLGTMTLPDLQNLDLSFNQLTGPIPSTYSALSHVNYIYLTGNLLTGPVPSWAEKAKSLDISYNNFSITSQWNETCQNLNVNLFASSMTRNDSRPVACLGSYICPKKLSYYLHINCGGKLVTVNRSRYDDDLENGGPSRFQWSGTKNWEISTTGNFLDNGGVEYYKSSNKSLLSMDNADLYMDARVSPISLTYFGFCLGNGNYTVKLHFAEIMFIDDQTFNSLGRRVFDIHIQGKLVQKDFNIVEEAGGIGKGTTSLPYRSVYGPLISAISVEPDFKPPSEKERISAGVVVGIVALGAVVIILVFGLLWWKGCVGKKSSLEKELKSLDLRTGLFSLRQIKVATNNFDVANKIGEGGFGPVYKGCLSDGTLIAVKQLSSKSKQGNREFLNEIGMISALQHVHLVKLYGCCVEGDQLLLVYEYMENNSLARALFGPEEHQIKLDWPTRYKICVGIARGLTYLHEESRLKVVHRDIKATNVLLDKDLNSKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIINGRSNTIHRQKEESFSILEWAHLLKEKGNLIDLVDRRLGSNFNKEEALVMIKVALLCTNVTAALRPTMSSVVSMLEGITVVEEVASETSEVLDEKKLEAMRLYYQELVMSNEEPWTASSTSVSDLYPVRMDSSYWEKRN 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01206 985 Gene3D Transferase(Phosphotransferase) domain 1 726 946 - -
Cca10g01206 985 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 301 356 - -
Cca10g01206 985 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 393 959 - -
Cca10g01206 985 Gene3D - 413 579 - -
Cca10g01206 985 Gene3D Ribonuclease Inhibitor 210 411 IPR032675 -
Cca10g01206 985 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 86 303 - -
Cca10g01206 985 SUPERFAMILY Protein kinase-like (PK-like) 634 937 IPR011009 -
Cca10g01206 985 Pfam Malectin domain 415 555 IPR021720 -
Cca10g01206 985 ProSiteProfiles Protein kinase domain profile. 650 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01206 985 ProSitePatterns Serine/Threonine protein kinases active-site signature. 772 784 IPR008271 GO:0004672|GO:0006468
Cca10g01206 985 Gene3D Phosphorylase Kinase; domain 1 617 725 - -
Cca10g01206 985 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 86 303 - -
Cca10g01206 985 Gene3D Ribonuclease Inhibitor 51 209 IPR032675 -
Cca10g01206 985 Pfam Protein tyrosine and serine/threonine kinase 652 919 IPR001245 GO:0004672|GO:0006468
Cca10g01206 985 CDD STKc_IRAK 656 924 - -
Cca10g01206 985 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 301 356 - -
Cca10g01206 985 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 393 959 - -
Cca10g01206 985 SUPERFAMILY L domain-like 94 370 - -
Cca10g01206 985 SMART serkin_6 650 921 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01206 Cca-Chr10 15567523 15590950 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01206 32 970 Receptor kinase-like Gene Family AT1G53420 55.773 0.0 986
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca10g01206 PK_Tyr_Ser-Thr 2.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01206 - - gmx:732563 1525.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01206 10 15567523 15590950 Cca10g01206 10 15567523 15590950 ECH