Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01204 ATGATGCGGTTTGTGATGACAAGCTCCAAAGATGTTTCCATGTTCTTCATCTTCGTGTCCCTGGCTTTCATGAATTGCTTTCAACACTTTGGATCCAACGCTCAACCCATTCCACAAGAAGAAGTGAAATTACTAGGAGCAATATCAGAGAAGCTAGAGAACGTGAATTGGAAAGTTACAGAACGTTCCTGCAACGGTGGTGGAGGATTTGATAACAGGAAAATATCAAGGGATCAGGATCAAATCATAAGGAATGTCACGTGTGATTGCACTTTCAACAATAACACCATTTGCCATGTGACATCCATTGCACTCAAGGGTATCAATGTATCTGGACCATTACCCGATGAATTTGGAAATCTAACTCATCTGAAAATACTTGATCTCACTCGGAATTATCTCAATGGCTCAATTCCAAAAAGTCTTGGACGCCTCTCTTCACTTGTCACTCTATCACTTTTGGGAAATCGACTTACTGGTTCAATTCCCCCAGAAATTGGTGATATGGCTAGTCTGCAAGAACTGAACTTAGAAGATAATCAACTTGAGGGAACTCTTCCCCCGAAGCTTGGAAATATGAAAAACTTGGAGAAATTACTTCTTTCTTCAAATAATTTCACAGGGACAATACCAGAAGCATATGGAAAACTAAAGAATCTCGCTCAGTTTAGGATAGATGGGAGCAGTTTATCTGGGAAGATACCTAGTTTTATTGGGAATTGGACCAAACTTGATAGATTGGATTTGCAGGGCACATCCTTGGAGGGCCCAATTCCTTCTATCATATCTGACTTGACAAGTTTGACAGAATTGAGAATATCTGATTTGAAGGGACCAACTATGACATTTCCTAATCTGAAGAATTTGAAACTCTTGATAAGACTGGAATTGAGAAATTGCTTAATCACTGGTCCAATTCCAAGCTACATTGGAGAAATAGAAAACTTAAAAATTCTAGATCTGAGCTCCAACAGGCTGACTGGTCCAATCCCAGATTCATTTCAAGACTTGGGAAAATTGAATTACTTCTTTCTGACTAACAATTCTCTAAGCGGACGAATTCCTGATTGGATAGTGAACTTAAAACAGAATGTTGATTTATCTTTGAACAATTTCACAGAGACTTCTGCATCTAGTTGCCAGATTTTGGATGTGAATATAGCTTCCAGCCACTCTCCCTCAGCAAACACTTCATTATCTTGTTTGAAGAGGAACCTACCTTGCTCAGGAAAACCCCGGTTTCATTCACTGTTCATAAACTGTGGAGGATCTGCAATAAAGTCTGAGGGCAATGAATATGAAGCAGACCCCAGTCTACGTGGCATTTCAAACTTTGTTGCTAGTGATAGTGGCAAATGGGCTTATAGTAGCACCGGAGTATATCTAGGAAATGAAAAAGCTGATTATGTAGCAAAAAATCAGTTTTCTTTGAATATTAATGGCCCTGAATACTACCAAACAGCCCGCATGGCCCCTGTGTATCTTAATTACTATGGCCTTTGCATGCTGAACGGCAATTATAAAGTGAAACTTCATTTTGCTGAGATAGTGTTCTCTAATGACCATAACTTCAGCAGCCTTGGGAAGCGTGTATTTGATATTTCAATTCAAGGTATTAAGTATTTGAAAGATTTTAATATTGTGCAAGAAGCTGGTGGAGTTGGTAAAGGAATCACTAAGGAGTTTAAAGTGGATGTCGATAACAACACCTTGGAAATCCAATTAGCATGGGCAGGGAAAGGAACTAATGCCATGCCTATAAGAGGTGTATATGGACCTCTTATATCTGCCATCACTGTGACCCCAAACTTTAAAGTTATTAGACATGGGCTGACTACTCGAACAACTGTTGGAATTGTGGCTGGGGCATGTGCGATTGTCATATTGATACTCTTTGCTCTTTGGAAGATGGGTTTCCTTTGTAGGAAAGATCAAACAGACCAAGAACTTCTAGGTCTGAAAACAGGTTATTTCAGTTTAAGACAAATTAAAGCTGCTACTGATAACTTTGATCCAGCAAATAAGATAGGTGAAGGAGGTTTTGGACCAGTATACAAGGGTGTACTGTCAGATGGTGCTGTGATTGCTGTTAAGCAACTCTCCTCGAAATCAAAGCAAGGAAATCGGGAATTCATCAACGAAATAGGCATGATATCTGCTTTGCAGCATCCAAATCTTGTGAAACTTTATGGCTGTTGCATTGAAGGAAACCAGTTGCTGCTAGTATATGAATACATGGAGAACAATAGTCTTGCTCGTGCACTTTTTGGTAAAGAAGAACAGAGGATGCACTTGAACTGGTCCACAAGAATGAGGATTTGTGTGGGGATTGCAAGGGGATTAGCTTATCTTCATGAGGAGTCAAGGTTGAAAATAGTACATAGGGATATTAAGGCAACCAATGTGTTACTGGATAAGCATCTCAATGCCAAGATATCTGACTTTGGTTTAGCCAAACTTGATGAAGAAGAGAATACACATATCAGCACAAGAATAGCTGGGACAATTGGTTACATGGCTCCTGAATATGCCATGCGTGGTTACTTGACCGACAAAGCAGATGTATATAGTTTTGGAGTTGTAGCTTTAGAGATTGTTAGTGGAAAGAGCAACACAAATTATAGGCCAAAGGAAGAGTTTGTATATCTCTTAGATTGGGCCTATGTTCTCCAAGAGCAAGGAAACCTTCTGGAGTTAGTGGATCCAAGCCTTGGTTCAAAGTACTCCAAAGAAGAGGTAATGAGAATGCTTCATTTGGCACTATTGTGCACCAATCCTTCTCCCACACTTAGACCACCTATGTCATCGGTAGTGAGCATGCTTGAAGGAAAAACTCCAATTCAAGCACCAATAATCAAACGCAGTGACAGTGCACAAGATGTAAGATTCAAAGCCTTTGAGATGTTATCACAAGACAGCCAAAGTCATATTTCTTCTGCATACTCACAAGATAGTATAGAGCAAAGAAGCAAATCAATGGGGGGACCATGGGCTGACTCCTCCTTATCTATTCCAAGTATAATCGATTATTCTTCAACCAATAAACTTGTTCCAAGTTCCAATGACGTGTGA 3072 0.3975 MMRFVMTSSKDVSMFFIFVSLAFMNCFQHFGSNAQPIPQEEVKLLGAISEKLENVNWKVTERSCNGGGGFDNRKISRDQDQIIRNVTCDCTFNNNTICHVTSIALKGINVSGPLPDEFGNLTHLKILDLTRNYLNGSIPKSLGRLSSLVTLSLLGNRLTGSIPPEIGDMASLQELNLEDNQLEGTLPPKLGNMKNLEKLLLSSNNFTGTIPEAYGKLKNLAQFRIDGSSLSGKIPSFIGNWTKLDRLDLQGTSLEGPIPSIISDLTSLTELRISDLKGPTMTFPNLKNLKLLIRLELRNCLITGPIPSYIGEIENLKILDLSSNRLTGPIPDSFQDLGKLNYFFLTNNSLSGRIPDWIVNLKQNVDLSLNNFTETSASSCQILDVNIASSHSPSANTSLSCLKRNLPCSGKPRFHSLFINCGGSAIKSEGNEYEADPSLRGISNFVASDSGKWAYSSTGVYLGNEKADYVAKNQFSLNINGPEYYQTARMAPVYLNYYGLCMLNGNYKVKLHFAEIVFSNDHNFSSLGKRVFDISIQGIKYLKDFNIVQEAGGVGKGITKEFKVDVDNNTLEIQLAWAGKGTNAMPIRGVYGPLISAITVTPNFKVIRHGLTTRTTVGIVAGACAIVILILFALWKMGFLCRKDQTDQELLGLKTGYFSLRQIKAATDNFDPANKIGEGGFGPVYKGVLSDGAVIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLVYEYMENNSLARALFGKEEQRMHLNWSTRMRICVGIARGLAYLHEESRLKIVHRDIKATNVLLDKHLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGKSNTNYRPKEEFVYLLDWAYVLQEQGNLLELVDPSLGSKYSKEEVMRMLHLALLCTNPSPTLRPPMSSVVSMLEGKTPIQAPIIKRSDSAQDVRFKAFEMLSQDSQSHISSAYSQDSIEQRSKSMGGPWADSSLSIPSIIDYSSTNKLVPSSNDV 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01204 1023 Gene3D Phosphorylase Kinase; domain 1 638 745 - -
Cca10g01204 1023 PANTHER - 388 1002 - -
Cca10g01204 1023 PANTHER - 302 361 - -
Cca10g01204 1023 PANTHER - 78 303 - -
Cca10g01204 1023 Pfam Protein tyrosine and serine/threonine kinase 674 940 IPR001245 GO:0004672|GO:0006468
Cca10g01204 1023 Pfam Leucine rich repeat 315 370 IPR001611 GO:0005515
Cca10g01204 1023 Gene3D Ribonuclease Inhibitor 220 407 IPR032675 -
Cca10g01204 1023 Gene3D Transferase(Phosphotransferase) domain 1 746 961 - -
Cca10g01204 1023 SMART LRR_typ_2 169 193 IPR003591 -
Cca10g01204 1023 SMART LRR_typ_2 121 145 IPR003591 -
Cca10g01204 1023 SMART LRR_typ_2 313 336 IPR003591 -
Cca10g01204 1023 ProSiteProfiles Protein kinase domain profile. 670 952 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01204 1023 Pfam Malectin domain 417 598 IPR021720 -
Cca10g01204 1023 Gene3D Ribonuclease Inhibitor 70 214 IPR032675 -
Cca10g01204 1023 CDD STKc_IRAK 676 943 - -
Cca10g01204 1023 SUPERFAMILY L domain-like 88 375 - -
Cca10g01204 1023 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 302 361 - -
Cca10g01204 1023 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 388 1002 - -
Cca10g01204 1023 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 78 303 - -
Cca10g01204 1023 SMART serkin_6 670 939 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01204 1023 MobiDBLite consensus disorder prediction 977 1002 - -
Cca10g01204 1023 Gene3D - 416 603 - -
Cca10g01204 1023 SUPERFAMILY Protein kinase-like (PK-like) 655 961 IPR011009 -
Cca10g01204 1023 ProSitePatterns Serine/Threonine protein kinases active-site signature. 792 804 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01204 Cca-Chr10 15539324 15551221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01204 2 1006 Receptor kinase-like Gene Family AT1G53440 60.725 0.0 1219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca10g01204 PK_Tyr_Ser-Thr 4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01204 - - gmx:121173337 1704.11