Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01188 atgctcaatcagaaccgagcgctcggtctcctcaagcttcttctccagcatcgccttctccgcctccagcttcgcgaggtttgttctcagggcggcaatctcctcttccctgccaccgagaatgacctcatcgcggagatgctcctcagctgccacaacaagctcgcccctcagaaagAACGCAAGAGAGATGTTAGCTTCCTGACAAACCTCCCTGATGCATCGGAAAAGCTTAAAATTTTCGAAGCTGATCTGAGCGACCCAGAAAGCTTTGGTCCATCAGTGGAGGGTTGCATTGGGGTTTTCCACACAGCCACCCCAATCGACTTCAACTTGACGGAGCCTGAAGAAGCGTTGACCAAAAGAGCTGTGGATGGAACCCTAGGCATTCTGAGAGCGTGCCTGAAGTCAAAGACCGTGAAGAGGGTCGTTTACACTTCTAGTGCCTCTGCCGTTTCCTTCGTTGGCCCCGAACCAAAAGATGTGGTGGATGAGGAGGATTGGAGTGATGTCGACTTTCTTAGAAGTTGGAAGCCCTATGGTTGGTCTTATGCCATTTCCAAGACGTTGACTGAGAAGGCTGCACTTGAGTTTGGCGAACTACATGGCTTGGATGTTGTCACTCTCATTCCTCCCTTTGTTGTTGGACGTTTCATCTGTCCCAAGCTTCCTGATTCCATTGAAAAGGCACTGGTCTTGGTAGTAGGAAAGAAGGAAGAAATTGGTATCACTCGTTACCATATGGTACACGGGGATGATGTGGCTCGAGCACATATATTCTTGCTTGAGCATCCTAATCCAAAAGGGAGATATAATTGTTCACCATTCATTGTACCCATTGAAGACATTTATCAAATTCTCTCTGCCAAATACCCTGAATATAAAATGCCAACGGTATTAGAAGAGCTGAAGCAAATTAAAGGTGCCAAGTTACCACATTTAACCTCCAAGAAACTCGAGGATGCTGGTTTTGAGTTCAAGTATAGCATCGAGGACATGTTTGTGGATGCAATTGAATGCTGCAAGGAAAAGGGATATCTTTAA 1044 0.3736 MLNQNRALGLLKLLLQHRLLRLQLREVCSQGGNLLFPATENDLIAEMLLSCHNKLAPQKERKRDVSFLTNLPDASEKLKIFEADLSDPESFGPSVEGCIGVFHTATPIDFNLTEPEEALTKRAVDGTLGILRACLKSKTVKRVVYTSSASAVSFVGPEPKDVVDEEDWSDVDFLRSWKPYGWSYAISKTLTEKAALEFGELHGLDVVTLIPPFVVGRFICPKLPDSIEKALVLVVGKKEEIGITRYHMVHGDDVARAHIFLLEHPNPKGRYNCSPFIVPIEDIYQILSAKYPEYKMPTVLEELKQIKGAKLPHLTSKKLEDAGFEFKYSIEDMFVDAIECCKEKGYL 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01188 347 CDD FR_SDR_e 57 324 - -
Cca10g01188 347 Gene3D - 50 347 - -
Cca10g01188 347 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 73 342 IPR036291 -
Cca10g01188 347 Pfam NAD dependent epimerase/dehydratase family 61 272 IPR001509 -
Cca10g01188 347 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 53 339 - -
Cca10g01188 347 PANTHER DIHYDROFLAVONOL 4-REDUCTASE-LIKE PROTEIN 53 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01188 Cca-Chr10 15270444 15275246 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01188 27 347 Monolignol Biosynthesis Gene Families AT2G02400 34.451 4.27e-48 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01188 - K13265 gmx:100194416 469.159