Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01178 ATGAAGAGGAACAGTTTGATGAAAGGCTACACTTACACTTGTGCCAACAAGAGCCCAACAAGAGAGTGCATCCATGTTGTCAACTGCTACAACAAGCACAACCAAATGGCTAAAGAGTGTTGGGAGTGcagcagcaacaacaacaacaacTCTCACAGCAATGCAGATCAGGACTATGTGAATGGCTTCCCATGGCCACCAAGATCATACACTTGCAGCTTCTGCAGAAAGGAGTTCAAGTCTGCTCAGGCACTTGGTGGACACATGAATGTTCATAGGAGGGATAGAGCAAGGTTGAGGCAGTCACCCCCAACTGATCAAGCTCAACAAGGCCCTATGctgaaccttaaccttgacccttcaactaaccctaacaactcaacctCATCTTTGTCCATGTTACCATCATCTTCTTCAACTCTCAAACCTGTCACTTGCACATTACCCTTGTTTGTTTCTCCCACTCCTCCTTCACCTTCTTCTGAGTTGAAGAGATCATGGGTTGTTGTGGATGGCATTCTGTTGAACCCTTTCAGCACCAAGACCCCAGAGCAGTCCAAGTCAAAGATTCCAGAATCTTTACCAGCTGGGGTTGGAGAATATGATCATGCTTTTGCCAGGGAAGATGGGTGCAAAGTGTTGAAGAAAGGTGAGATTCTCAGGATGGACTTGGAGATAGGTTTGCCTAGAGATTATGATTTAGATCTGGAGCTTCGTTTGGGTACTACTTACTCCTAG 738 0.4173 MKRNSLMKGYTYTCANKSPTRECIHVVNCYNKHNQMAKECWECSSNNNNNSHSNADQDYVNGFPWPPRSYTCSFCRKEFKSAQALGGHMNVHRRDRARLRQSPPTDQAQQGPMLNLNLDPSTNPNNSTSSLSMLPSSSSTLKPVTCTLPLFVSPTPPSPSSELKRSWVVVDGILLNPFSTKTPEQSKSKIPESLPAGVGEYDHAFAREDGCKVLKKGEILRMDLEIGLPRDYDLDLELRLGTTYS 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01178 245 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 97 IPR013087 -
Cca10g01178 245 Pfam C2H2-type zinc finger 70 94 - -
Cca10g01178 245 Gene3D Classic Zinc Finger 66 116 - -
Cca10g01178 245 SUPERFAMILY beta-beta-alpha zinc fingers 67 96 IPR036236 -
Cca10g01178 245 PANTHER OS07G0101800 PROTEIN 11 245 - -
Cca10g01178 245 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Cca10g01178 245 MobiDBLite consensus disorder prediction 86 136 - -
Cca10g01178 245 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 11 245 - -
Cca10g01178 245 SMART c2h2final6 70 92 IPR013087 -
Cca10g01178 245 MobiDBLite consensus disorder prediction 102 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01178 Cca-Chr10 15137302 15138446 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01178 56 241 C2H2 Transcription Factor Family AT3G23130 45.213 2.28e-36 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca10g01178 zf-C2H2_6 1.5e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01178 - - var:108333719 352.058