Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01174 ATGTCGCTCAGGAAGGTCTTCCGCTCCCGCAAGTTCTCCAGATCCTTCAAGGACCTGCCGCCGGTCGAGGTCGCCGGCGCCGGCGAGAGGAGGGACGGCGGAGGCGAGGAGGCCGACATCGGGAACGAGTGGTCCGCCATGCTGCCCGAGATTCTCGGCGAGATCGTGCGGCGGGTCGACGCCGCCGAGGAGCAGTGGCCTAACCGTCAAAACGTCGTCGCTTGCGCCTGCGTCTGCAAGCGGTGGCGCCACATCACGCGCGAGATCGTGCGTCAGCCCTCGAACACCGGCAGAATCACTTTCCCGTCGTGCCTTAAACAGCCAGGACCACGCGACGTTCCCCACCAGTGTCTCATAAAGCGTAACAAGAAGACCTCAACGTTTTATCTATATCTTGCTCTAACACCATCATTCACAGATAAAGGGAAGTTTCTGCTAGCAGCTAGAAGATATAGGTGTGGTACCCATACTGAGTATATAATTTCACTTGATGCTGATGACTTATCCCAAGGAAGCAAGGCTTATGTTGGAAAGTTAAGCTCGGATTTTCTCGGCACCAACTTCACAATTTATGACAGCCAGCCACCCCATAGTGGTGCAAAACCATCTAGTGGCAGGGCCAGCCGTCGGTTCACCAGCAAGCAGATAAGCCCGCAAGTTCCTGCCGGTAACTTTGAGGTGGGGCAGGTCTCCTACAAGTTCAACCTTTTGAAATCAAGAGGACCAAGGAGAATGGTTTCCTCATTGAAGTGTCCCGTGACTCCTGTCCCGCCAATGGGTGAAAATTCAGATAGCACGTCTCCCGATGGCCATAAGGATAAAGATCATGTTGCTTCTGGCTACACAATCTTGAAGAATAAAGCTCCAAGGTGGCATGAACATTTGCAATGTTGGTGCTTGAATTTCCATGGTCGTGTGACAGTTGCCTCGGTGAAGAACTTTCAGCTGGTTGCAACAGTGGACCAAAGCCAACCAGGAGGTAAAGGAGATGAGGAAACAGTTCTTCTCCAGTTTGGTAAAGTGGGGGATGATACATTTACCATGGATTATAGACAGCCCTTATCTGCTTTCCAGGCTTTTGCCATTTGCTTAACTAGCTTTGGCACCAAACTTGCTTGTGAGTAA 1125 0.5182 MSLRKVFRSRKFSRSFKDLPPVEVAGAGERRDGGGEEADIGNEWSAMLPEILGEIVRRVDAAEEQWPNRQNVVACACVCKRWRHITREIVRQPSNTGRITFPSCLKQPGPRDVPHQCLIKRNKKTSTFYLYLALTPSFTDKGKFLLAARRYRCGTHTEYIISLDADDLSQGSKAYVGKLSSDFLGTNFTIYDSQPPHSGAKPSSGRASRRFTSKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVSSLKCPVTPVPPMGENSDSTSPDGHKDKDHVASGYTILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01174 374 PRINTS Tubby superfamily signature 159 175 IPR000007 -
Cca10g01174 374 PRINTS Tubby superfamily signature 175 199 IPR000007 -
Cca10g01174 374 PRINTS Tubby superfamily signature 224 251 IPR000007 -
Cca10g01174 374 PRINTS Tubby superfamily signature 284 301 IPR000007 -
Cca10g01174 374 PRINTS Tubby superfamily signature 302 318 IPR000007 -
Cca10g01174 374 PRINTS Tubby superfamily signature 331 350 IPR000007 -
Cca10g01174 374 PRINTS Tubby superfamily signature 352 374 IPR000007 -
Cca10g01174 374 ProSitePatterns Tub family signature 2. 359 374 IPR018066 -
Cca10g01174 374 ProSitePatterns Tub family signature 1. 302 315 IPR018066 -
Cca10g01174 374 Gene3D Tubby Protein; Chain A 100 374 IPR025659 -
Cca10g01174 374 SUPERFAMILY F-box domain 44 87 IPR036047 GO:0005515
Cca10g01174 374 MobiDBLite consensus disorder prediction 194 215 - -
Cca10g01174 374 Pfam Tub family 105 369 IPR000007 -
Cca10g01174 374 SUPERFAMILY Tubby C-terminal domain-like 93 374 IPR025659 -
Cca10g01174 374 MobiDBLite consensus disorder prediction 248 274 - -
Cca10g01174 374 PANTHER TUBBY-LIKE F-BOX PROTEIN 7 32 374 - -
Cca10g01174 374 PANTHER TUBBY-RELATED 32 374 - -
Cca10g01174 374 Pfam F-box domain 49 90 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01174 Cca-Chr10 15073821 15082072 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01174 1 374 TUB Transcription Factor Family AT1G53320 72.775 0.0 548
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Cca10g01174 Tub 1.4e-100 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01174 K19600 - gmx:100801919 663.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01174 10 15073821 15082072 Cca10g01174 10 15073821 15082072 ECH