Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01160 ATGTCGCATTCCTCGGGGAAGCCCGTTTCCGACGTGGTGGCCATCGACGCCTTCGCCGATCGCTTCCGCGAAACCCTAAAATGTGACAACACCAACAAGCCCGACTTCCGAGAGCTCGATCTGGGCTCGCCAGTCTCGCCATTGCGGACGCGGGCCCCCGCCGCGAGTACCAGCTCCAGCTCTTCCGGATCCTTCTCCGGCCGAACCGGGCCCGGGCCGGTTCCGCGAAAGCCCGACAACAGTAACACTAACAGCAACAATAACAACTCCGGTGAACTTTCTGGTTCCAGCGAGAACAGCCCCAAGCCGGGTCACGCGAGATCCGACTCCGGATCCGCGCCGGCGCCGTTGATTTACTCCGGCCAGACGGTGACTTCGCCGCCGATGAACGTTCTCCCCACCGGGAACATCTGCCCCTCCGGCAAGATCCTTAAGATGGCGCCGAATCGGAGTGGCAGAAGCGACGTGTTGGGCTCCGGCATGGGGAACTACGGCCACGGCAGCATAATGCGGGGCGGCGGAGCCGCCGCCGGGAAGGCGGAGCCGGTGAGTTCTCGCGGAAATGAGACGGCGAAGAGAGGGGTGCACGTGCAGGGTGTGGATCCGGAGGAGTTGAAGAGATTGGGGAATGAGTGTTACAAAAAGAGGCATTTTTCTGATGCGTTGAGTCTCTATGATCGCGCCATTGCTTTGTCGCCGGCGAGCGCTGCCTACCGTAGCAACCGCGCGGCGGCGCTGACCGGGTTGGGGCGGTTGGGGGAGGCTGTGAGGGAATGTGAGGAGGCTGTTAGATTGGATCCTAATTATGGGAGGGCTCATCAGCGTTTGGCTTCTCTTTTCCTCAGGTTGGGACAAGTTGAGAATGCTAGGAAGAACCTTTGTTATCCTGGAATGCAGGCAGATCCGTGTGAGATGCAGAGGTTGCAAGTGGTGGAAAAGCACATCAGCAAATGTGGGGATGTACGGAGGGTAGGGGATTGGAAGAGTGTTTTGAGGGAGGTTGATGCTGCTGTTGCTGCTGGAGCGGATTCTTCTCCTCAGCTCTTTATGTGTAGAGCAGAAGCCTTTTTGAAGCTCCACCAGATTGATGATGCAGAATCGGTTTTTTTGCAAATTGCCAAATCCGAGCCGCACACTAGTTCCTCTTCTCAGGCAAGGTTTTTTGGGATGCTTTCTGAGGCTTATTGCTATTTTGTCAGAGCTCAAATTGAGATGGCATTGGGAAGGTTCGAGAATGCAGTTACAGCTGCTGAGAAAGCCAGTCAGATTGATCCCCGGAATGTTGAAGTTGCTGTTTTGCTCAACAATGTGAGGATGGTGGCAAGGGCCCGAGTGCGTGGCAATGATCTTTTTAAATCTGAGAGGTACACCGAAGCTTGCTCGGCATACGGGGAAGGTTTGAGACTGGACCCTTCGAATTCTGTTCTTTATTGCAATAGAGCAGCTTGTTGGTTTAAGCTTGGGCAATGGGAAAGATCAATCGAAGATTCCAACCAAGCTTTACATATCCAACCAAATTACACCAAGGCCCTTCTTCGAAGGGCTGCATCAAACAGCAAGCTAGAAAGGTGGGAAGAAGCGGTCATAGATTATGAGGTCTTACGGAGAGAACTTCCAAATGACAATGAAGTTGCTGAATCTCTTTTCCACGCACAAGTTGCCCTTAAGAAATCACGCGGGGAAGAAGTATATAATTTAAAATTTGGTGGCGAAGTAGAAGAAGTATCAGGTCTTGAGCAGTTTAGAGCTGCAATATCTTTACCAGGTGTATCTGTTGTCCATTTTGAAGTTGCATCTAACTCTCAATGCAAGCAAATATCACCATTTGTCAATACACTATGTGGTCGATATCCATCTATTAACTTCCTCAAGGTGGACATTCAAGAAAGCCCAACAGTTGCAACTGCAGAGAACGTTAGGATTGTACCAACCTTCAAGATATACAAAAGTGGCAGCCGAGTGAAGGAAATTGTATGTCCTAGTCGCGACATGTTGGAACACTCCGTGCGGCATTACAGCTTTTAG 2025 0.5175 MSHSSGKPVSDVVAIDAFADRFRETLKCDNTNKPDFRELDLGSPVSPLRTRAPAASTSSSSSGSFSGRTGPGPVPRKPDNSNTNSNNNNSGELSGSSENSPKPGHARSDSGSAPAPLIYSGQTVTSPPMNVLPTGNICPSGKILKMAPNRSGRSDVLGSGMGNYGHGSIMRGGGAAAGKAEPVSSRGNETAKRGVHVQGVDPEELKRLGNECYKKRHFSDALSLYDRAIALSPASAAYRSNRAAALTGLGRLGEAVRECEEAVRLDPNYGRAHQRLASLFLRLGQVENARKNLCYPGMQADPCEMQRLQVVEKHISKCGDVRRVGDWKSVLREVDAAVAAGADSSPQLFMCRAEAFLKLHQIDDAESVFLQIAKSEPHTSSSSQARFFGMLSEAYCYFVRAQIEMALGRFENAVTAAEKASQIDPRNVEVAVLLNNVRMVARARVRGNDLFKSERYTEACSAYGEGLRLDPSNSVLYCNRAACWFKLGQWERSIEDSNQALHIQPNYTKALLRRAASNSKLERWEEAVIDYEVLRRELPNDNEVAESLFHAQVALKKSRGEEVYNLKFGGEVEEVSGLEQFRAAISLPGVSVVHFEVASNSQCKQISPFVNTLCGRYPSINFLKVDIQESPTVATAENVRIVPTFKIYKSGSRVKEIVCPSRDMLEHSVRHYSF 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01160 674 Pfam Tetratricopeptide repeat 209 268 - -
Cca10g01160 674 ProSiteProfiles TPR repeat profile. 394 427 IPR019734 GO:0005515
Cca10g01160 674 MobiDBLite consensus disorder prediction 26 127 - -
Cca10g01160 674 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 17 672 IPR044534 -
Cca10g01160 674 Gene3D Tetratricopeptide repeat domain 200 560 IPR011990 GO:0005515
Cca10g01160 674 ProSiteProfiles TPR repeat profile. 474 507 IPR019734 GO:0005515
Cca10g01160 674 MobiDBLite consensus disorder prediction 173 195 - -
Cca10g01160 674 SUPERFAMILY Thioredoxin-like 477 672 IPR036249 -
Cca10g01160 674 MobiDBLite consensus disorder prediction 50 68 - -
Cca10g01160 674 SUPERFAMILY TPR-like 203 305 IPR011990 GO:0005515
Cca10g01160 674 Gene3D Glutaredoxin 567 673 - -
Cca10g01160 674 SMART tpr_5 474 507 IPR019734 GO:0005515
Cca10g01160 674 SMART tpr_5 508 541 IPR019734 GO:0005515
Cca10g01160 674 SMART tpr_5 202 235 IPR019734 GO:0005515
Cca10g01160 674 SMART tpr_5 440 473 IPR019734 GO:0005515
Cca10g01160 674 SMART tpr_5 394 427 IPR019734 GO:0005515
Cca10g01160 674 SMART tpr_5 236 269 IPR019734 GO:0005515
Cca10g01160 674 SMART tpr_5 346 379 IPR019734 GO:0005515
Cca10g01160 674 Pfam Thioredoxin 580 665 IPR013766 -
Cca10g01160 674 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN TTL1 17 672 - -
Cca10g01160 674 SUPERFAMILY TPR-like 347 528 IPR011990 GO:0005515
Cca10g01160 674 Pfam Tetratricopeptide repeat 396 427 IPR019734 GO:0005515
Cca10g01160 674 ProSiteProfiles TPR repeat profile. 202 235 IPR019734 GO:0005515
Cca10g01160 674 CDD TRX_family 579 666 - -
Cca10g01160 674 MobiDBLite consensus disorder prediction 76 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01160 Cca-Chr10 14913161 14917189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01160 439 584 U-box Gene Family AT3G07370 27.322 1.39e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01160 - - gmx:100795358 1111.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01160 10 14913161 14917189 Cca10g01160 10 14913161 14917189 ECH