Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01158 ATGGTGAACCTGCACTTGTCAGTAGAGATGTTGATCAACACTGAAATAGACGATTTATGTGAAGATAACTTTGAAGGGTCTAATGAAGAAAGACAGATTTTTTCAGATGTCTTTTCTGGTAATTTTCAGTCTAGTCAGAAGTGTCTTGTTTCTGGAGCTATCAGCTTTGAACATGAATCCACTAAAAGCACGCTTAAATCATTCTGCTCTAGTAATGAAAACTCAGTTGTATTGCATCCCTCATCTTCAAAATTTACACCCACTGAGGACTTTAATGTAATTCAGCATTCCAAAGAGACTGCTCTGGGGTGTGTGCCAGAGAGTTACATTTGTGAAGACCAGAATGACGAGGATGTGAATGTCAAACGAATGAAATTTTCTCTGCATGAACTTGCTTGTAGTAGGTCTGATTCAGAAAAAAATTTGAGTTCATCACGACTTTCAAAATTAGTTGTTTCTGACGTGTCTCATGCTGCTACAGACTGTGATAGTGAACCAATTGCATTTCATTTAGTTGAATCATCTAAACATGGTGTGATATCAAGTTATCTATTGAATAATGACTTGTTCAATAAAGAAGCTACTAAGGATGAAGTAGATGTTACAAATTTTAACTCAACAATTGCAGATGGAAATGTTGCAAAAGAGGGGTCTATAAGTAAAGCTGTTGCTTCTCCTGTTTCCCAAGAGAGCTTTGCAAACAGGCTTGTAGTTACAAGTCCCTCAACCGCTGTTGTGAAGAAGTCAGGGTCTCCTTTAAATCCTGATGAAATGCCAGAATCTTTTAATGTGGATATCTCAAACTCATTTTCAAAGCTAGAGGAAGAGGACCCTCGTACTATACTGCAGATTCATGTTGTGCAGTTGCTTAGGATGGCAGGATGGTCTATTGAGAAACGTAAACGACCTAGTAGGCGTTACATGGAGTCGGTTTATAGGACACCAGAAGGAAAGCCTGTTCGGGAGTTTACAAAAGCTTGGAGATTATGCGGTCAGCTATTGTCTGTTGAAAAATGCAATTTAAAGTTCAGAGATTATAAGGAATGGACTGATATTAGTCAATTCTGGTCTGATCTATCCAATGCACTGATAAATGTTGAAAAAACAAAGTCCCGGTCAGAAGACCCTGCTGTTATATTGGCTTATCAATGGTGGCTTTTGGATCCTTTTGTGGTAGTTATATTTGTTGATAGAAAGATTGGTGTGCTGAAAAAGGGAGAGGTAGTGAAAGCAAGTTGGAGTTTAGTTTCTAGCAAGTATAAGGTGGCATGTGCTCCCATTGATTCAGGCCCTGGAAATTCAAATCTGGTACCTGCAGGGTCTAAAAGTGTTGATAATCAGAGCTCAGGAAATTATCTGGAAACAAATAAAAATATCGATGGAGATGTGTCAATGGACATGTCAGCGGAAAATAATGCATATGGTGTGAGCCATGACCTGGTTCATTCTCGTGACTCAAGGGGTATGCAACAGTCTGAATGTAGTGAGGAAGAGGGTGTGAAAATCTCAGTAGATTCTGTATTTGGGAAAGGTAACACATATTCTGCTTCTAATGTTATTCCTAAAAAGAAAATGCGGAGGAAGTGCAAAAGGGTATCTGAAATCAAACTGAGTATGTTCTACCATAGTGGCATGATGGGCTCAACTGTTACTGACCTGGTGCAGTTGCCAAATGATGAAGCATGTGGATTGGAGGAGATCCAAGATTATGTAGTTGACAATGCGGGAAAGAAAAGAAACTGCAGAAAGTTGTCATCTGTTAGTGCATTCCAGAGAAATATTAGGAAAACAAACTGCTCCATAACTGGAACAGATAAGTCTAACAGATGCAAGATTAAAGACGATGATTTATTGGTGTCGGCAATATTCAGGAACAAGGACTTCAGCCCAAAGACAATTCGGAGTAATTCTAGAGCTAAATCCTGCAAATCAAGGAGCCAGAGAAAGCTTAAAAGCCAAAAGGGCCGTTGCAGGTTGTTACCAAGGAACCCCTGTAATGGAGGGAAGTACAATAAGGACTGCAATAGGTTTTATTTGGGTACAAGGACAATATTATCCTGGTTGATTGAGAATGGGGTCATATCTTTAAATGATGTGATTCAATACCGAAATCCTAAGGATAATGTTGTCATTAAGGATGGTAGGATCACCAAAGATGGTATTATTTGTACATGTTGTGATAAGGTGCTTACATTATCAGAGTTCAAGTTTCATGCTGGGTTTACTCTGAATCGCCCTTGCTTGAATATTTTCATGGAGTCTGGCGAGCCGTTTACACTGTGCCTCCTTCAAGCTTGGTCAGCTGAATACAAAGCCAGGAAAAGCCAGAATCAAGCAGTGCatgctgatgataatgataaaaatgatgatTCTTGTGGGTTGTGCGGTGAGGGGGGTGAGCTGATATGTTGTGATAACTGTCCGTCTACTTTTCACCTAGCTTGTTTGTCCACTAAGGAGATTCCAGATGGCAACTGGTACTGCCCAAACTGCACTTGTAGGATATGTGGAAATTTGGTCATTGATAAAGACACTTCAGATGCGCATGATTCATTACAATGTTCACAGTGTGAACATAAATATCATGAGAAATGCCTGCAAGATAGAGATAAACAAGAAGGAGCAGTTTCAGACACTTGGTTTTGTGGTCAAAGTTGTCAGGAGGTGTACACTGGACTCCAATCTCAGGTGGGGTTAGTTAATCAAGTTGCTGATGGCACCTCATGGATGCTTCTTAGATGCATCCATGATGACCAAAAGGTTCATTCTGCACAGTGGTTTGCCCTAAAGGCAGTATGCAATACAAAATTAGCTGTTGCTCTTACTATAATGGAGGAGTGTTTTGTGTCAATGTTTGATCCAAGAACTGGCATCCACATGATACCTCAAGTTTTATACAACTGGGGGTCTGAGTTTGCTCGACTGAATTTTCAAGGGTTTTACACTGTGGTATTGGAGAAACAGGATGTGCTAATATCTGCAGCATCTATCAGGGTGCACGGAACTACAGTAGCAGAGATGCCTCTAATTGCAACTTGTAGTCAGTATCGTCGCCAGGGAATGTGCCGACTCCTTGTGAATGCTATTCAACAGATGTTAATATCTGTCAAGGTGGAAAAGCTTGTTATATCCGCCATTCCAGATTTGGTAGAGACATGGACTAAGGGATTTGGATTCACACTTGTTGATGACATTGAAAGGCAAAGATTGAATAAAATTAATTTGATGGTTTTTCCTGGGACAGTATTACTTGAAAAACCCTTACATGGGAAGGAGAAAATTGAAGCTGAAACAGGAGTATGTGATCCAACTCAAGCAACAGATGAATCTATCAAAGCAGGTATCTGTTCTGAAGGAATGAACATAACTGAATCATCACCACAAGATGTTGGAAACATAACTACCAACAAAGTTGACATAAAGTCAGAACAAGAACCTGTGGAGGGTAATAATCAATCAGACTATAAGGCTGGAAGTGAAACCAGTAGAGATGATAATACACAAGCTATTGACACTGCATTAGAAGCCAAAGAATCAACAGAAATAGGTAGCTGTTTTAAAGAAGAGAAGATCACCCAGCTGACAGTGTCAAGTGGCTCAGAGAAATCTATTGAAGAAAACGATGTGCTGGAATTGAGAACAAGTGATTCAGTACAGAAATCTAGTGAGAATTGTTGTGCTAACAAAGATGGTGCTGAACCAGGTATAAGAATTGTTGAGGACAAGAAGATGAAAGTAGGTGAAGGTCAGGAAAATGCTTTGCAGGGTCATTTTTCAAATTTGTCCTGCAAAACATTTTTAGGCAACAATTTTGACACGGATTCCAATATTGAATGCTCAGTGATGTATGATGAAACAACCTTTTTTGGAACATTTGCAAAGTCTGCAAGCTGA 3894 0.3942 MVNLHLSVEMLINTEIDDLCEDNFEGSNEERQIFSDVFSGNFQSSQKCLVSGAISFEHESTKSTLKSFCSSNENSVVLHPSSSKFTPTEDFNVIQHSKETALGCVPESYICEDQNDEDVNVKRMKFSLHELACSRSDSEKNLSSSRLSKLVVSDVSHAATDCDSEPIAFHLVESSKHGVISSYLLNNDLFNKEATKDEVDVTNFNSTIADGNVAKEGSISKAVASPVSQESFANRLVVTSPSTAVVKKSGSPLNPDEMPESFNVDISNSFSKLEEEDPRTILQIHVVQLLRMAGWSIEKRKRPSRRYMESVYRTPEGKPVREFTKAWRLCGQLLSVEKCNLKFRDYKEWTDISQFWSDLSNALINVEKTKSRSEDPAVILAYQWWLLDPFVVVIFVDRKIGVLKKGEVVKASWSLVSSKYKVACAPIDSGPGNSNLVPAGSKSVDNQSSGNYLETNKNIDGDVSMDMSAENNAYGVSHDLVHSRDSRGMQQSECSEEEGVKISVDSVFGKGNTYSASNVIPKKKMRRKCKRVSEIKLSMFYHSGMMGSTVTDLVQLPNDEACGLEEIQDYVVDNAGKKRNCRKLSSVSAFQRNIRKTNCSITGTDKSNRCKIKDDDLLVSAIFRNKDFSPKTIRSNSRAKSCKSRSQRKLKSQKGRCRLLPRNPCNGGKYNKDCNRFYLGTRTILSWLIENGVISLNDVIQYRNPKDNVVIKDGRITKDGIICTCCDKVLTLSEFKFHAGFTLNRPCLNIFMESGEPFTLCLLQAWSAEYKARKSQNQAVHADDNDKNDDSCGLCGEGGELICCDNCPSTFHLACLSTKEIPDGNWYCPNCTCRICGNLVIDKDTSDAHDSLQCSQCEHKYHEKCLQDRDKQEGAVSDTWFCGQSCQEVYTGLQSQVGLVNQVADGTSWMLLRCIHDDQKVHSAQWFALKAVCNTKLAVALTIMEECFVSMFDPRTGIHMIPQVLYNWGSEFARLNFQGFYTVVLEKQDVLISAASIRVHGTTVAEMPLIATCSQYRRQGMCRLLVNAIQQMLISVKVEKLVISAIPDLVETWTKGFGFTLVDDIERQRLNKINLMVFPGTVLLEKPLHGKEKIEAETGVCDPTQATDESIKAGICSEGMNITESSPQDVGNITTNKVDIKSEQEPVEGNNQSDYKAGSETSRDDNTQAIDTALEAKESTEIGSCFKEEKITQLTVSSGSEKSIEENDVLELRTSDSVQKSSENCCANKDGAEPGIRIVEDKKMKVGEGQENALQGHFSNLSCKTFLGNNFDTDSNIECSVMYDETTFFGTFAKSAS 1297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01158 1297 Pfam PHD-finger 792 833 IPR019787 -
Cca10g01158 1297 Pfam Tify domain binding domain 714 764 IPR032308 -
Cca10g01158 1297 PANTHER PHD FINGER PROTEIN 12 10 445 IPR042163 GO:0003714|GO:0045892
Cca10g01158 1297 PANTHER PHD FINGER PROTEIN 12 451 1295 IPR042163 GO:0003714|GO:0045892
Cca10g01158 1297 CDD PHD2_CHD_II 791 831 - -
Cca10g01158 1297 SMART PHD_3 791 832 IPR001965 -
Cca10g01158 1297 SMART PHD_3 833 887 IPR001965 -
Cca10g01158 1297 CDD PHD_SF 832 882 - -
Cca10g01158 1297 PANTHER INCREASED DNA METHYLATION 1 451 1295 - -
Cca10g01158 1297 PANTHER INCREASED DNA METHYLATION 1 10 445 - -
Cca10g01158 1297 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 942 1089 IPR000182 GO:0016407
Cca10g01158 1297 MobiDBLite consensus disorder prediction 1140 1166 - -
Cca10g01158 1297 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 939 1065 IPR016181 -
Cca10g01158 1297 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 834 891 IPR013083 -
Cca10g01158 1297 ProSiteProfiles Zinc finger PHD-type profile. 789 834 IPR019787 -
Cca10g01158 1297 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 782 833 IPR013083 -
Cca10g01158 1297 SUPERFAMILY FYVE/PHD zinc finger 776 833 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01158 Cca-Chr10 14877403 14886047 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01158 10 1149 PHD Transcription Factor Family AT3G14980 41.161 0.0 780
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Cca10g01158 TDBD 1.2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01158 - - gmx:100777440 2156.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01158 10 14877403 14886047 Cca10g01158 10 14877403 14886047 ECH