Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01156 ATGGGGTCAACATTCAAGCCCGTCTCATGCACCAAAAAAGCTCCATACAGAATAGAAACCAAGAATTTGTCATACAAGTTGTGCAGCCAGCTTGATGAATATAGAAGTCTTTGTTTTGGTTCCAATCCAGGGAGAGGTGGCAAGTTCATTTTGAAGGATGTGAATTGTGAGGCAAGGCCGGGGGAGATAACTGCTATTGCTGGCCCTAGTGGAGCTGGAAAAACCACACTGCTTGAGATCCTTGCTGGGAGGATCCCCCCATGTAAAGTGTCAGGCCAAGTGCTTGTGAATCATAGGCCTATGGATGTGAACCGGTTTAGAAGAACATCAGGGTATGTCACACAAGAAGATGCTTTGTTCCCATCACTGACAGTTAGAGAGACACTCATGTATAGTGCCATGCTGAGGCTTCCTGTGGGGAGAAAAGTTGCTGCCGCAAGAGTGTCAGAGTTGATGAAGGAGCTTGGGTTGGACCACGTTGCAGATTCAAGAATTGGAGGTGGATCAGATCACGGCATATCCGGTGGCGAAAGGCGACGAGTTTCCATAGGTGTGGACTTGGTTCATGACCCTGCAGTTATTTTGATTGATGAACCAACTTCAGGGTTGGATTCAGCGTCAGCTCTTAGTGTTGTCTCATTGCTTAGACTTGTGGCATTTAACCAAGGTAAGACAATTGTTTTAACTATCCACCAACCTGGTTTCAGAATCTTGGAGCTTTTTGATGGCCTCATTTTGCTGTCTGATGGATTTGTGATGCATAATGGATCATTGAGTCTTCTTAAGACTGGCCTCAAGTTAGCAGGGCACCACATTCCGGATCATGTCAATGTCCTTGAGTTTGCTCTTGATGTCATGCAAAGCTTGGTTATACATACTCCAGAATCTGGGGACAACCAGTTTCTGCTCAAATACAAAGAGAACCAAGGTCACAAAACAATGACGCAGTACTCTAAGGTTGTCAAAGAGAGGGCACTTAAGTACTCGAATTCTCCAATGGAGGAGATTTCAATCCTGGGACAAAGATTTTGCTGCAACATATTCAGAACCAAGCAACTCTTTGTCACCAGGGTCATACAGGCTTTAGTAGCTGGTTTTGTACTGGGGAGCATATTTTTTGATGTTGGCAATCAACGAAGTCATGTAGCATTGCAAACAAGAAGTGGCTTCTTTGCTTTCAGCCTTACCTTTTTGTTATCATCAACAACAGAAGGCCTGCCCATTTTCTTGGAGGAGAGAAGAACTTTTATCAGAGAGACTTCAAGAGGAGCTTATAGAGTTTCTTCCTATGTTTTATCAAACACCCTTGTGTTCGTTCCTTTCCTTCTATTGGTTGGTCTTCTGTTCTCTACACCAGTTTATTGGCTGGTAGGATTAAGGAAAGGCATTGATGGTTTCCTTTACTTCTCCTTAGTGGTTTGGGTATTTCATATCCAAGGAAAAAATACCATGTTACTGGATTTTTATGCACTATTTGAGCCTATTCAAGTATCCATTTGA 1500 0.4333 MGSTFKPVSCTKKAPYRIETKNLSYKLCSQLDEYRSLCFGSNPGRGGKFILKDVNCEARPGEITAIAGPSGAGKTTLLEILAGRIPPCKVSGQVLVNHRPMDVNRFRRTSGYVTQEDALFPSLTVRETLMYSAMLRLPVGRKVAAARVSELMKELGLDHVADSRIGGGSDHGISGGERRRVSIGVDLVHDPAVILIDEPTSGLDSASALSVVSLLRLVAFNQGKTIVLTIHQPGFRILELFDGLILLSDGFVMHNGSLSLLKTGLKLAGHHIPDHVNVLEFALDVMQSLVIHTPESGDNQFLLKYKENQGHKTMTQYSKVVKERALKYSNSPMEEISILGQRFCCNIFRTKQLFVTRVIQALVAGFVLGSIFFDVGNQRSHVALQTRSGFFAFSLTFLLSSTTEGLPIFLEERRTFIRETSRGAYRVSSYVLSNTLVFVPFLLLVGLLFSTPVYWLVGLRKGIDGFLYFSLVVWVFHIQGKNTMLLDFYALFEPIQVSI 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01156 499 Pfam ABC-2 type transporter 335 477 IPR013525 GO:0016020|GO:0140359
Cca10g01156 499 PANTHER ABC TRANSPORTER G FAMILY MEMBER 10 6 478 - -
Cca10g01156 499 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 46 266 IPR027417 -
Cca10g01156 499 Pfam ABC transporter 51 201 IPR003439 GO:0005524
Cca10g01156 499 CDD ABCG_EPDR 41 256 - -
Cca10g01156 499 ProSitePatterns ABC transporters family signature. 173 187 IPR017871 GO:0005524
Cca10g01156 499 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 18 274 IPR003439 GO:0005524
Cca10g01156 499 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 6 478 - -
Cca10g01156 499 SMART AAA_5 60 251 IPR003593 -
Cca10g01156 499 Gene3D - 12 271 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01156 Cca-Chr10 14849427 14851042 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01156 41 263 Calmodulin-binding Proteins AT2G36910 27.753 2.04e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01156 K05681 - gmx:100776372 801.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01156 10 14849427 14851042 Cca10g01156 10 14849427 14851042 ECH