Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01155 ATGGCGACTCAGATCCTCTCTCGCGTCTTCCCCAAAACCCTAACCCTAACCCCCTTCCTctcccgctccctctccctctccgccaccgcccctccctccctctccgccctctccttcctccgccgcatctccctcgcggcctccccctccctccgcTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGACGGCTACCACTTCGAACACTGGCTCGTCGTCATGGAGAAGCCCGAAGGCGACCCCACCCGCGACGAAATCATCGATTCCTACATCAAAACTTTGGCCAAGGTTATCGGAAGTGAAGAGGAAGCCCGGATGAAGATATATTCTGTTTCGACTAGGCACTACTTTGCGTTTGGTGCGCTTGTGTCTGAAGAGCTTTCTTACAAGATTAAAGAATTGCCGGGAGTTCGGTGGGTGCTTCCTGATTCTTATTTGAATGTCAAGGAGAAGGATTATGGAGGTGAGCCCTTTATTAATGGGCAAGCGGTTCCTTATGATCCCAAATATCATGAGGAGTGGGTTAGAAACAATGCTCGGGCTAATGAAAGAAACAGGCGCAATGACAGGCCTCGAAATGCTGACAGGTCAAGGAACTTTGACAGGAGGAGGGAGAATGTGGTGAACAGAGACATGCAGGGTAGACCTCCTATGCCTGGCGGTCCTCCAAGCAATGCAGGTGGTTTCCCTCCAAATAATGCAGGTGGATATGGACCTCCAGGCAACATGGGTGGGCCCCCTCCCAGCAACCCGGGTGGATATCCTCCTAACAATGCCGGTGGGTATGCCCCTCCCAATGCAGGTGGATATGCTCCACCCAATGCAGGTGGATATGCTCCTAACACGAGTGGTGGCTATGGTCCAGGGGGTGGTGTGCCACAGAATAACTACCCTGGCAGCATGGGAGGGGTGCCACCAAACCAGAACACGGGAGGGTATCCGAATGGAGGATGGTCAAATAATGCTCCCAATAGAGACGTGCAAAACAGGGATATGGGAGGAGCACCTGGTTCCGTGGGGGATGATATGATGGTGGGTGAACGAACTTGTAGAACTGGCAGCAGGAATGTTTTGTTCTTGAGTGACAGCATTTCACAGGGTTTGGTGGTCTGTTTGGGAATGCTTTATACAAGGTTTCTGTCAGTATCGAAAACTATACTGTTCTTCACGCTGAGATTATGGTCTTGTACTGTATCAGAGGGTAATCTGGTGAAAAAGAGGAGTTTCTGTTTTTCACAATTTCGCCTCACTCACACTGCAACTCCGAACATGCTTAACAATGGCGTGTGCAGTCTCCGCACGTGCCTCCGTTTCCCGGAGAGTCCCCTATTCCTAGCTCCGCCGCGCTCGTTCTGTTGCCGGCGGCGGTTTTTGGTTGCTGCATCCGAGGCCAAGAAGAAAGAGAAGGTGATTGTGATTTCTGGACCCACCGGTTCCGGCAAGAGCCGCCTCGCATTGGAACTCGCGAAGCGCCTCAACGGAGAAATCGTCAGTGCCGATTCCGTTCAGGTGTATCGGGGTCTTGATGTTGGATCTGCAAAGCCTTCCCCAAACGAAAGAAAGGAGGTACCGCATCATCTGGTTGATATCCTGCACCCATCTGAAGATTATTCTGTTGGGCAGTTTTTTGAGGATGGGAGGCAAGCTACAAGAGGTATTCTTGACAAAGGCCGTGTTCCCATAGTTGTCGGGGGCACTGGATTGTATTTAAGATGGTTCATATATGGAAAGCCAGATGTACCTAAAGCCTCTCCAGAGATTACATCTGAAGCACATCATGAGTTAGCTGAACTACAGAGGAAGGAAGACTGGGATACAGCTGTGCAATTGGTGGTTAAAGCTGGTGATCCAAAAGCCCAATTTCTAACAGTGAATGATTGGTACCGATTACGGCGTAGCCTAGAGATTATTAAGTCTAGTGGATCACCTCCTTCTGCTTTTCGGGTACCATATGATTCTTTCAGGGAACAGGGTGAATATAGTGTTGGTGATGGTTCTGAGTCATCTGATAAGAACACTTATGGTGATGCAGTGGAAGAAACCAATTCATCAGAGTTAGACTACGAGTTTATATGTTTTTTCCTTTCTAGCCAAAGACTTGACCTCTATAAATCAATTGATTTTCGATGTGAAGATATGCTATTAGGAAGGGATGGGATTTTGTCCGAGGCTCAATGGCTTCTTGATATGGGTCTTCATCCAAACTCCAATTCTGCAACAAAAGCAATTGGTTACAGACAAGCAATGGAGTACTTACTAAACTGCAGAGAGCAAGGGGGTGAAAGTTCTGTCCGAGAATTTTACAAATTCTTGTCTGAGTTTCAAAAAGCATCACGGAATTTTGCAAAAAGGCAGTTGACATGGTTTCGCAATGAACATATATACCACTGGCTTGATGCTTCTAAATCTATGGAAACCATTCTCAACTTCATCCATGGTGCATACCATGATTGGAATGGAAGTCTTCTTGTGCCTGAACACCTAAGAATGTCTAGAGATATTTCTAATCGCAAAGAAGCCACACAAATTAAGTCTTACCGCACCAAAAATAGGCATTTTGTGAACGGGGAAGATTGTTCTCCTATTCTGAACTGGATAAAGAAGACTCAGAGGTGA 2667 0.4409 MATQILSRVFPKTLTLTPFLSRSLSLSATAPPSLSALSFLRRISLAASPSLRCXXXXXXXXXXXXXXXXXXXXXXXXXXDGYHFEHWLVVMEKPEGDPTRDEIIDSYIKTLAKVIGSEEEARMKIYSVSTRHYFAFGALVSEELSYKIKELPGVRWVLPDSYLNVKEKDYGGEPFINGQAVPYDPKYHEEWVRNNARANERNRRNDRPRNADRSRNFDRRRENVVNRDMQGRPPMPGGPPSNAGGFPPNNAGGYGPPGNMGGPPPSNPGGYPPNNAGGYAPPNAGGYAPPNAGGYAPNTSGGYGPGGGVPQNNYPGSMGGVPPNQNTGGYPNGGWSNNAPNRDVQNRDMGGAPGSVGDDMMVGERTCRTGSRNVLFLSDSISQGLVVCLGMLYTRFLSVSKTILFFTLRLWSCTVSEGNLVKKRSFCFSQFRLTHTATPNMLNNGVCSLRTCLRFPESPLFLAPPRSFCCRRRFLVAASEAKKKEKVIVISGPTGSGKSRLALELAKRLNGEIVSADSVQVYRGLDVGSAKPSPNERKEVPHHLVDILHPSEDYSVGQFFEDGRQATRGILDKGRVPIVVGGTGLYLRWFIYGKPDVPKASPEITSEAHHELAELQRKEDWDTAVQLVVKAGDPKAQFLTVNDWYRLRRSLEIIKSSGSPPSAFRVPYDSFREQGEYSVGDGSESSDKNTYGDAVEETNSSELDYEFICFFLSSQRLDLYKSIDFRCEDMLLGRDGILSEAQWLLDMGLHPNSNSATKAIGYRQAMEYLLNCREQGGESSVREFYKFLSEFQKASRNFAKRQLTWFRNEHIYHWLDASKSMETILNFIHGAYHDWNGSLLVPEHLRMSRDISNRKEATQIKSYRTKNRHFVNGEDCSPILNWIKKTQR 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01155 888 MobiDBLite consensus disorder prediction 198 227 - -
Cca10g01155 888 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 9 477 887 - -
Cca10g01155 888 MobiDBLite consensus disorder prediction 679 695 - -
Cca10g01155 888 MobiDBLite consensus disorder prediction 198 362 - -
Cca10g01155 888 MobiDBLite consensus disorder prediction 675 695 - -
Cca10g01155 888 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 477 887 IPR039657 -
Cca10g01155 888 TIGRFAM miaA: tRNA dimethylallyltransferase 487 664 IPR018022 GO:0008033
Cca10g01155 888 MobiDBLite consensus disorder prediction 317 344 - -
Cca10g01155 888 Hamap tRNA dimethylallyltransferase [miaA]. 487 826 IPR018022 GO:0008033
Cca10g01155 888 Gene3D - 484 875 IPR027417 -
Cca10g01155 888 Gene3D - 595 666 - -
Cca10g01155 888 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 487 617 IPR027417 -
Cca10g01155 888 Pfam IPP transferase 520 809 - -
Cca10g01155 888 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 482 798 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01155 Cca-Chr10 14829106 14840609 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01155 490 788 C2H2 Transcription Factor Family AT2G27760 27.632 1.19e-18 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01155 K00791 - gmx:100808814 809.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01155 10 14829106 14840609 Cca10g01155 10 14829106 14840609 ECH