Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01152 ATGGAAAAACGCAGACAAACAATGTTGTTCCAAAAAGAAAGAAAAAGGAGGCCCCTTGAGATGGCGGTTATCCGGTTATCCCTCATCCGCGTTTGGCATGGAACGTCGAAAATTGAATGGCAGGGAATAGCAACCGCTGTCCAGGAGGAAAAGCGTCTTGTAAAAATCGTGATAATAAACAAAAGCAAACAGCGCCTGAGTCTGGATCCCCAAAGGAAGAACCAACTCCAGGAGGAGCAGGAgcaacggcaacggcaacagcaacggaaacggGGTTTCTCGGCTTCGGTGGAGCATGCGGGTGGAACGACGTCGTCCAGGCAGGGCATGGTGAGAGGGGAGATAGTGGAGGTTGAAGGGGGTCACATTGTGCGGTCCACAGGGCGGAAGGACCGTCACAGCAAGGTATGCACCGCCAAAGGGCCCAGAGACCGACGGGTCAGGCTTTCGGCCCACACCGCTATTCAATTCTACGACGTCCAGGACCGCCTCGGCTACGACCGCCCCAGTAAGGCCGTCGACTGGCTCATCAATAAAGCCAAGTCCGCCATCGACCAACTCGCGCACCTCCCTCCTTGGAAACCCACGCTCCCAACGCACCTTAATAACACCCCGCAAAACGACGACGAATCGGAGaaacacagccacagccacaaccaaaaccctaaccccaaccaaaaccCCGATGTGGGGATTCTCAACCACTTCAACGAGAACGACAACCAAGAGAACCAGAACGTTCACCAGGATGGGGGAGGTTCAGGTTCGGGGTTTCTTCCGTTGGATAACGAGGCGATTAGGTCGTTCTTCCCCACGACGACGTCGTCGTTGATTCAGTTCCATAACTACCCGCCGGATTTGCTTTCGAGGACGAGCAGCCAGGACCTGAGACTCTCGCTACAGTCGCTGCAGGACCCGATTATGCTGCACCAGAGCAACAACGAGCACGTGCTATTCGCAGGGTTTGATAACATGGTAGCGTGGAATAATGCTGCTAATGATACGggtggtggtggaggtggaggaggaggaggaggGTTTGTGTTTAACGCTCCTTCGCCTTTGCAAGGGCCGGCCACGGTGGCGTCGCCGGCGGTGGTGTTTGGCCAGAgccacagccacggccacggccacggccacggccaGTATCTTTCTCAGAGGGGACCCCTTCAGTCCAGTAACAGCCCTTCCGTTCGTGCGTGGATTGACGCGCCGTCGTTTGTGGCCGCAGattatcatcatcatcatcgacatcaCTATCTGTCGCCTgcggcggcggcggcggcgTTGGTGTATCAGTCTTCTCCTTCTTCGGCATTTGCGCCGCCCGGTGGCTTCTCGGGTTTCCGCGTGCCGGCACGAATTCAGGGCGAGGAGGAGCACGACGGCGTGTCGGATAAGCTGTCCTCTGCTTCCTCCGATTCTCGCCGTTGA 1434 0.4874 MEKRRQTMLFQKERKRRPLEMAVIRLSLIRVWHGTSKIEWQGIATAVQEEKRLVKIVIINKSKQRLSLDPQRKNQLQEEQEQRQRQQQRKRGFSASVEHAGGTTSSRQGMVRGEIVEVEGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLINKAKSAIDQLAHLPPWKPTLPTHLNNTPQNDDESEKHSHSHNQNPNPNQNPDVGILNHFNENDNQENQNVHQDGGGSGSGFLPLDNEAIRSFFPTTTSSLIQFHNYPPDLLSRTSSQDLRLSLQSLQDPIMLHQSNNEHVLFAGFDNMVAWNNAANDTGGGGGGGGGGGFVFNAPSPLQGPATVASPAVVFGQSHSHGHGHGHGQYLSQRGPLQSSNSPSVRAWIDAPSFVAADYHHHHRHHYLSPAAAAAALVYQSSPSSAFAPPGGFSGFRVPARIQGEEEHDGVSDKLSSASSDSRR 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01152 477 MobiDBLite consensus disorder prediction 218 252 - -
Cca10g01152 477 MobiDBLite consensus disorder prediction 89 108 - -
Cca10g01152 477 MobiDBLite consensus disorder prediction 190 258 - -
Cca10g01152 477 MobiDBLite consensus disorder prediction 67 88 - -
Cca10g01152 477 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 99 316 IPR005333 GO:0003700
Cca10g01152 477 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 320 476 IPR005333 GO:0003700
Cca10g01152 477 MobiDBLite consensus disorder prediction 67 108 - -
Cca10g01152 477 MobiDBLite consensus disorder prediction 371 396 - -
Cca10g01152 477 PANTHER TRANSCRIPTION FACTOR TCP4 99 316 - -
Cca10g01152 477 MobiDBLite consensus disorder prediction 448 477 - -
Cca10g01152 477 PANTHER TRANSCRIPTION FACTOR TCP4 320 476 - -
Cca10g01152 477 MobiDBLite consensus disorder prediction 454 477 - -
Cca10g01152 477 ProSiteProfiles TCP domain profile. 129 187 IPR017887 -
Cca10g01152 477 Pfam TCP family transcription factor 128 244 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01152 Cca-Chr10 14763459 14765382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01152 104 476 TCP Transcription Factor Family AT1G53230 43.032 9.12e-78 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Cca10g01152 TCP 9.3e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01152 - - gmx:100796938 488.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01152 10 14763459 14765382 Cca04g01482 04 20711667 20714666 ECH
Cca10g00920 10 10637161 10640613 Cca10g01152 10 14763459 14765382 ECH
Cca10g01152 10 14763459 14765382 Cca10g01152 10 14763459 14765382 ECH