Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01145 ATGGCACAGTTACCTCCCAAAATACCAACCATACCCCAAAATTGGCCATCTTTCCCTCACCAGAGGGTACCCTCAATGGCCAACTTCTcccccacaacctcaaccaccaccaccaccaccaccgccaccactcctccgccgccatcaTGGGTCGACGAGTTTCTCGACTTCTCGTCGGCCCGGCGGGGGGCCCACAGGCGATCCGCCAGCGACTCCATTGCCTTCCTGGAAACGCCCTTCCTCGAAGAATGTCGGGCCGGTTTCGACCGCCTCGACGAGGACCAGCTCATTTCCATGTTCTCCGACGACATTgccaccgccgcgctgccgccgccgcccctctcctcggcctccaacccctcctcgccgtcctccgACCAGAATAGCAACAACGACGAGAAGCCAATGGCAATGGCGTTGGACGTTAAGCCCAAGACGGAAACCGTTGAGGATGAAAGCTCCTGCAAGAATGAGGCGGcgccgccgccaccctccgcctccgccaccTGCACTGAAACCGTTGTCGATCCCAAGAGGGTCAAAAGAATTTTGGCAAATAGGCAATCAGCTCAGAGGTCAAGGGTGAGAAAGCTACAATACATTTCTGAGCTTGAAAGGAGCGTAACTACTTTACAGACGGAGGTATCAGCATTGTCACCACGAGTTGCATTCCTGGACCATCAACGTTTGATTCTTAATGTCGACAATAGTGCCTTGAAGCAACGGATTGCTGCTTTGGCCCAAGACAAGATTTTCAAAGACGCTCACCAAGAAGCACTAAAGAAGGAAATAGAGAGACTGAGGCAAATCTACCACCAACAGAACCTACAGAAGATGAGTAACTCGGTGAACAACAATGTTCAATCAACACAAACATCACAGGCACAAGCAATGCAACTCCATCAGCAGCAGCTAACAGTTTCTCAACCATTGGGATGCAAGGACAATAAGGAGCAGCTCCTGAGTTGA 969 0.4169 MAQLPPKIPTIPQNWPSFPHQRVPSMANFSPTTSTTTTTTTATTPPPPSWVDEFLDFSSARRGAHRRSASDSIAFLETPFLEECRAGFDRLDEDQLISMFSDDIATAALPPPPLSSASNPSSPSSDQNSNNDEKPMAMALDVKPKTETVEDESSCKNEAAPPPPSASATCTETVVDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQIYHQQNLQKMSNSVNNNVQSTQTSQAQAMQLHQQQLTVSQPLGCKDNKEQLLS 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01145 322 SMART brlzneu 174 238 IPR004827 GO:0003700|GO:0006355
Cca10g01145 322 CDD bZIP_plant_RF2 179 229 IPR044759 GO:0003700|GO:0006355
Cca10g01145 322 SUPERFAMILY Leucine zipper domain 178 232 IPR046347 GO:0003700|GO:0006355
Cca10g01145 322 Gene3D - 177 250 - -
Cca10g01145 322 PANTHER BASIC LEUCINE ZIPPER 2 1 301 - -
Cca10g01145 322 Pfam bZIP transcription factor 178 223 IPR004827 GO:0003700|GO:0006355
Cca10g01145 322 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 181 196 IPR004827 GO:0003700|GO:0006355
Cca10g01145 322 MobiDBLite consensus disorder prediction 138 154 - -
Cca10g01145 322 MobiDBLite consensus disorder prediction 14 47 - -
Cca10g01145 322 Coils Coil 257 277 - -
Cca10g01145 322 PANTHER BASIC LEUCINE ZIPPER 34 1 301 - -
Cca10g01145 322 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 176 228 IPR004827 GO:0003700|GO:0006355
Cca10g01145 322 MobiDBLite consensus disorder prediction 1 49 - -
Cca10g01145 322 MobiDBLite consensus disorder prediction 119 134 - -
Cca10g01145 322 MobiDBLite consensus disorder prediction 107 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01145 Cca-Chr10 14640862 14644264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01145 1 256 bZIP Transcription Factor Family AT3G58120 52.083 5.77e-83 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Cca10g01145 bZIP_1 1.6e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01145 - - gmx:100820197 474.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01145 10 14640862 14644264 Cca10g01145 10 14640862 14644264 ECH