Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01143 ATGGAACAAATGACAGATTCAGAAATTGATCAACGGAGACAAGGCTATCATCATTCTGAACCCTGTATCCTTATGAGAGGAACCACCAGCATCTCACAGCCTAATAATATTCATGCAATGGTGAGAGCTTCAGGGAACACAACTAATGTTGAATCTCACTTTTTGCCAGATGCTTATGACAATGCTAGGGTGTATGGGGTTCCGCAATACAATGGAATTCAGCCTCCACATAACCTTGAGATGGGTGTACCAGCTGCAACCAACTTATATTATTCTGGCATAAATCCTTCTTCTGGTACTGGTGTTTTCCCCCTGCCTCTAAATCACAGAGCCTCTGATCAGTTGCCAGGTTCCAGCACATTTGCAGTTGCTGGAGTTTCTTCAGATAATTTTGGGAGAAGTTCTGGTTACATGGATGATGTTAGAGGTCCATACAAAAGGAAAACTGCTGAAGGGATTAGAGGAAGTCACCAGTATTTTAATGGTTCATCTAGCTCTTCAATTGGTCCCCCTAATGCAAGACACACTGATGGGGTTGCTATGATGGATAATGCATCATTTTCATTCCGCATCCCTTCACTTGTGGAAGTAGGACCACATGGTAGTGCATGGAGCCGGGCAGGTGAGTCTATTATGGTGCATGACCATAATCATTTGATCCATGGAAACTATTTAGGGCAGCACTTTCAGCCAGCTGCTCCTCCCTGGTTGGACCAGCAGTTGAGTAGTAACAATAATGATGGTCATACTACACCCTGGAATCAGTCTCTTCCTATGCCTTATGTACAAGCACCCAATGTTAATGGAAGTTCATTAGAGAGTGCAAGTATGGGTTTGCATAGATACCATGATCCATCTGCGAACCGAAATGGCCTCAGGTTTCCTCATCCTCTTCCTGTCAACCAACAGCACCATAATTATCATCACCCAGCACTGCCTATGCAAGGAGTAAGAGGTCACAATATCAACTTTCACCCTGCTGCAGTAAATGCAGCTTCATATAGACTTCCAACAAATCCTTCACGCGGTGTTGCGATCCCAGCACAGACTGGTTTTGAGATGGGTCCTAGGCATGTTGGCCCCGCCCCACAACCTGGCCTTCGGATTTACCGACCTCATAGAGGTGTTGTGCCTGAGACAACTCTTGGACATCGAACTCTTCCCCCTGTGGGCTTCCTGCAAGTTGATGATGTTGCTTTAATTGATGAAGTGGGCCATTATGTTGACCATCACAGAGATATGCGCTTGGACATAGAGGATATGTCTTATGAGGATCTCCTTGCATTGGGTGAGCGGATTGGCAATGTAAGCACTGGTTTATCAGAGGAAACAATTACAACTCAACTGAAGACAAAAACTTATTTAATGCGTGCTACTGCTATTAATCTGGAGGAGGAAGCCTCTGATGACCAGGAAACAGATTCTTGTATAATATGTCAGGATGAATTTAAGAACCAAGAGGAAATTGGAGTTCTTCGATGCGAGCATGAATATCATGCAGATTGCTTGAAGAAGTGGTTGGTTGTCAAAAATGTCTGCCCCATTTGCAAATCAGAAGCTTTGACTCCTGGAAGGAAGGATGGATAG 1587 0.4436 MEQMTDSEIDQRRQGYHHSEPCILMRGTTSISQPNNIHAMVRASGNTTNVESHFLPDAYDNARVYGVPQYNGIQPPHNLEMGVPAATNLYYSGINPSSGTGVFPLPLNHRASDQLPGSSTFAVAGVSSDNFGRSSGYMDDVRGPYKRKTAEGIRGSHQYFNGSSSSSIGPPNARHTDGVAMMDNASFSFRIPSLVEVGPHGSAWSRAGESIMVHDHNHLIHGNYLGQHFQPAAPPWLDQQLSSNNNDGHTTPWNQSLPMPYVQAPNVNGSSLESASMGLHRYHDPSANRNGLRFPHPLPVNQQHHNYHHPALPMQGVRGHNINFHPAAVNAASYRLPTNPSRGVAIPAQTGFEMGPRHVGPAPQPGLRIYRPHRGVVPETTLGHRTLPPVGFLQVDDVALIDEVGHYVDHHRDMRLDIEDMSYEDLLALGERIGNVSTGLSEETITTQLKTKTYLMRATAINLEEEASDDQETDSCIICQDEFKNQEEIGVLRCEHEYHADCLKKWLVVKNVCPICKSEALTPGRKDG 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01143 528 MobiDBLite consensus disorder prediction 1 19 - -
Cca10g01143 528 SUPERFAMILY RING/U-box 475 521 - -
Cca10g01143 528 SMART ring_2 476 516 IPR001841 -
Cca10g01143 528 MobiDBLite consensus disorder prediction 1 21 - -
Cca10g01143 528 Pfam Ring finger domain 474 517 IPR001841 -
Cca10g01143 528 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 130 525 IPR045191 GO:0061630
Cca10g01143 528 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 130 525 - -
Cca10g01143 528 ProSiteProfiles Zinc finger RING-type profile. 476 517 IPR001841 -
Cca10g01143 528 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 438 521 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01143 Cca-Chr10 14579453 14583832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01143 393 521 C3H Transcription Factor Family AT2G15530 45.185 2.39e-34 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01143 K19041 - gmx:100800642 807.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01143 10 14579453 14583832 Cca10g01143 10 14579453 14583832 ECH