Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01142 ATGAAGAAACCGAAGCAAACTCAGATGAACCCCAATTGGGTTCAACTCCAACAAAAGCTGAAGCTGAATGCCTCCAAGGCTTCAAGGACCTTCAATAATTCAGATGACGACACCCCAAACTCAATACTAGGGAAACGTAAAGAAAGACCAGATGATGAATCCAATGATTGTCAGAATAATCCTCTTATTCCTGTAAATGACGATTCAAGTCTGACAGATGCAGTGGCCATGGATTGTGAAATGGTTGGCGTTGGTCAAGGAAACAAAAGTGCCCTTGGAAGAGTGACACTGGTCAACAAATGGGGAAATGTTGTTTATGACGAGTTTGTCCGGCCAATGGAGCGGGTTGTTGACTTCCGCACTAAAATTAGCGGCATAAGACCTCGAGATCTTCGAAAAGCAAAGGATTTTTGGACTGCTCAGAAGAAAGTAGCAGAGTTGATCAATGGAAGAATCCTTGTTGGTCATGCCTTGTGCAATGATCTTAAGGCATTATTATTAAGTCATCCCAAAAAGGACATACGAGATACTTCTGAGTACCAACCATTTCTAAAGTCAAGTAGCAGAAGAGCACTGCGGCATCTTGCTGCAGAACATCTTGGTGTTAAGATCCAAACAGGAGAGCACTGCCCTATAGAAGATGCTCGTGCTGCTATGATGCTTTACCAAAGAAATAAAAAGGAATGGGAGAAGAGCATAAAAGATCAATTTCGGCTCAAACAGAAACAGAGGAAATCAAAGCAGAAAAAGAGGCAGAAGAATGAAGATGCTTCAAATGCCAACCACGTTGGAGTTGGATCATAG 804 0.4229 MKKPKQTQMNPNWVQLQQKLKLNASKASRTFNNSDDDTPNSILGKRKERPDDESNDCQNNPLIPVNDDSSLTDAVAMDCEMVGVGQGNKSALGRVTLVNKWGNVVYDEFVRPMERVVDFRTKISGIRPRDLRKAKDFWTAQKKVAELINGRILVGHALCNDLKALLLSHPKKDIRDTSEYQPFLKSSSRRALRHLAAEHLGVKIQTGEHCPIEDARAAMMLYQRNKKEWEKSIKDQFRLKQKQRKSKQKKRQKNEDASNANHVGVGS 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01142 267 PANTHER INTERFERON STIMULATED EXONUCLEASE GENE 20-RELATED 53 255 IPR034920 -
Cca10g01142 267 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 53 255 - -
Cca10g01142 267 Coils Coil 240 260 - -
Cca10g01142 267 MobiDBLite consensus disorder prediction 40 55 - -
Cca10g01142 267 MobiDBLite consensus disorder prediction 24 39 - -
Cca10g01142 267 Coils Coil 212 232 - -
Cca10g01142 267 SMART exoiiiendus 73 231 IPR013520 -
Cca10g01142 267 MobiDBLite consensus disorder prediction 24 68 - -
Cca10g01142 267 CDD REX4_like 75 223 IPR037431 GO:0006364|GO:0008408
Cca10g01142 267 MobiDBLite consensus disorder prediction 236 267 - -
Cca10g01142 267 SUPERFAMILY Ribonuclease H-like 74 230 IPR012337 -
Cca10g01142 267 Gene3D - 70 250 IPR036397 GO:0003676
Cca10g01142 267 Pfam Exonuclease 75 222 IPR013520 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01142 74 228 C2H2 Transcription Factor Family AT5G40310 39.181 1.17e-28 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01142 K18327 - gmx:100819122 468.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01142 10 14565874 14569538 Cca10g01142 10 14565874 14569538 ECH