Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01137 ATGCGATCATCGCCATCTTCATTGGGCTCCTCGTCTCGATCGGGTTCGCGGCTTCGGAAGAAGCACAAGAGGTTGGATGCAATATGTGAGGAAGAGTACAATCGAAACCACGGTGAGTTGAATGAGGATGATGGTGATTTGAACCCTGATGCCGGGGTTCGTCGGAGCTCCCGGGTTCGCCGTGCCCCAGTTTTGCTCGACGCGTCTCCTCCTCCGCCGAAGAAGCGGCGGAGGGTGGAGAAGGGTGGAATTAGTGGTGGTGTGGAGGGTGCCAATAGTTTAGGGCGGGAAAATAGAGGTTCTGGCGGGGCTTGGAGTTCTAGGTTGAGATCAAGAGCTGGCAATGTAGGTTTTAGGGTGAAGGAGGAGGGTGAATCGCCACGTGGGAAGAGGAAGCTTTTTGAGGGTGTGGTTGGAAGGAGGGGTGATGGTGAGGTTGGTGGGAAAGAGGAGTTAGATGGGTTGATGCCGAAGGTAGTTAAGTCAAAGAGACCGGGGAGGATTAAAGCTACAAAGCATGAGGAAGGGCATGAGGAGGATGTTTCTCATGGGAGTTTAGATGAGAGTAAGAGTCAGGATGTGGAGGAGCTTGTGTTGAGCAATAGTGAGGAGAGTGATTCTGCTTCGGAAACCGAATTGTCGGGAGAGGATCAGATGGATGATTCAGATATGGATGATTCGGATGGAAAAGCCCCTCCTATGATTGGGAATGAGGAGGGGAATCAGATAGAGAATTTGGATGGAAATGTCCCTCCTATGGTAGGGAATGAGGAGAGAAGCTTGTCCAATGATCTGCAAATGCAGGAGTGTGGTGTTAACAATGAGCTTTCTCCTGTGGAACGTGTAGATAAAGTAGATGGTCAGTTAGACAGTGTGAAGGAAAGTAGGGATGCAGGTGATGTAGCTGAACAGGTGAATAATGAAGGTTCCAATGGCAAGGAAGTTGACATTGATGACAATGTCTTGAATGAGGCAAATGTTGGGAAGAGGGATGAGTCGAAACATGCTTCAAGTGACAAGCGTGGTCACCAGCGTATCAAAGAGGGCAGGCGGTGTGGGTTGTGTGGTGGAGGGAGTGATGGTAAGCCTCCAAAAAGGTTAGTTCAGGATAATGGTGAAAGTGAGAATGAAGCTTATAGCGGGTCATCATCTTCAGAGGAGACTAATTATGATATCTGGGATGGTTTTGACGATGAACCTAGCTGGCTTGGGCGTCTCTTGGGTCCTATTAATGATCACTATGGTATTGCTAGAATATGGGTTCATCTGCACTGTGCTGTATGGAGTCCAGAGGTTTATTTTGCTAACTTTGGATGCTTAAAAAATGTGAGGGCTGCACTATTCCGAGGAAGAGCATTGAAGTGCACACGCTGTGGGAGGCGAGGGGCAACCACTGGCTGTCGTGTTGATCGTTGTCCAAAAACTTATCACTTGCCTTGTGCGAGAGCAAGTGGTTGCATCTTTGATCATCGTAAATTTCTTATAGCCTGCACAGATCATAGGCATCTCTTCCAACCTCGTGGTAATAAATATATGGCCCGGATAAAGAAGTTGAAGGCTAGGAAACTGATGTGGGAGATAAGGAAGCGATCAAATGAAGCTTGCAGAAAAGATATTGGAGATGAAGAGAGATGGCTAGAAAATTGTGGAGAGGATGAAGAATTTTTAAAGCGTGAGAACAAGAGGCTTCATCGTGATTTATTGAGAATAGCCCCAGTATACATTGGGGGTTCAGACTCTGCCAGTGAAAATTTATTTCAGGGATGGGAATCTGTTGCTGGGCTTAAGGATGTCATCCGTTGCATGAAAGAAGTGGTTATTTTACCTCTGCTATATCCTGAACTTTTTGATAATTTAGGGCTTACACCTCCAAGAGGTGTTCTTTTACATGGGCACCCTGGAACAGGGAAAACCTTAGTGGTTCGGGCATTGATAGGTGCATGTGCCCGTGGTGATAAGCGGATTGCATATTTTGCCCGTAAAGGTGCAGATTGCTTGGGGAAGTATGTTGGTGATGCTGAGCGTCAACTAAGATTATTATTTCAGGTTGCTGAGAAATGTCAACCTTCTATAATATTCTTTGATGAGATAGATGGACTGGCACCCTGCCGCACTAGGCAGCAAGATCAGACACATAGTTCTGTTGTGTCAACATTGCTTGCTCTTATGGATGGTTTGAAATCTAGGGGTTCTGTTGTGGTCATAGGTGCAACAAACCGTCCTGAAGCAGTTGACCCGGCGCTTAGGCGCCCTGGTAGATTTGATAGGGAAATTTATTTTCCACTACCATCTATTGAAGATAGAGCTTCCATTCTCTCACTTCACACCCAAAAGTGGCCAAAACCAATTACTGGATCCTTGCTCGAGTGGATTGCAAGAAAAACACCTGGTTTTGCTGGTGCTGATCTCCAGGCTCTTTGTACCCAAGCAGCAATCAATGCGTTGAAGAGGAACTTCCCTTTGCAAGAAGTCCTGTCTTTAGCTGCTGAAGATAAACATTCAAGTTGCAAGAACATTGCTCTTCCATCCTTTGCAGTAGAGGAGAGGGATTGGCTGGAGGCTTTTTTTGCTTCTCCACTACCTTGCTCCCGGAGAGATGCTGGAAATGCTGCTAATGATGTAGTATGCTCCTCTCTTCCCACCCGACTTATCCCTTGTTTATTGCAGCCATTATGCACTCTTCTTGTATCTCTTTATCTTGATGAACGTCTATGGTTACCACTATCCATATCTAAAGCTGTAACAGTGATAAAGGATGTCATGATTTCTGCTCTAGACAAAAAGCAGAAGCCTTTTGATCGCTGGTGGTTGTACATGGATGATTTTCTTCAAGAAACAAATATTGTTTATGAGTTAAAGAAAAAGCTTACATGTTCTGGCATTTTATCTGCGGACAATGGTGTTGCTGGTTCTTATGATACTGTGCATGGTGCCAATGATAACGACTTGAAGTTAGAATCTTCTGCAAGGAACCATCTTGGTATGCGTAGTGGTTTATTTACATTAACCAACAAATCAGGATTTCGTATATTAATTTCTGGAAATCCACGATCTGGCCAAAGACATGTTGCTTCTTGCCTTCTTCACTGCTTTATTGGGAATATTGAAATACAGAAGATTGATATGGCAACTATTTTACAAGAAGGGCATGGAGAAGTGGTGCAAGGGATTGCTCAAATATTAATGAAATGTGCTAGCAGGCAATCTTGCATAGTATTCTTGCCAAGAATTGATTTATGGGCTGTGGATAAACATTTCCAAATTGCTGAAAGGGCTGGTTCTTGTTTAACAATGCGAAAGTCTTGTTTCACAAGAAACGAAGCTGTTGAGAAGGAAAATGAGACTGGGACTGAAAAAAACTTGTCTGAGATGACCAAAGGCCAAACCAACACAAAGGCTTCATATGCCTGGATGTCATTTATTGAGCAGGTGGAGTCCATTGGTGTATCCACATCCTTGATGATTATGGCTACTTCAGAAGTTCCCTATACAGAACTTCCACAAAAAGTAAGAGAATTCTTCAAGAGTTATCAATCTAAAGATAGCCAGTCAACTCCTTTGGAGCAGACAGTTCCTCGATTCTCTGTGCAGGTTGATGGGAATTTTGACAATGACTTGGTAATCAATCTATCTGCAGCAGAGCTATTGAGAAATGTAGTTGAGCAGCAGGTTCAATTGATTCATCAGAGATCTCATGTTCATATGGGTGCCCAAAAGGGTCACAGAACCTATGAATCAATTGAAGTTTGTAAAGATAAGGTATGTCAAAGAAAAGAAGATGGATCCGCAAATGATAATGATAAGGGTGAAATCCAACATGAATCCTTTACAAAAGTTCCACCAACACCCAACAGCAAGACACTAAAGGGAAAGTCAACTGTGTTGTTGGCAATATCCACACTTGGCTATCAAATTCTTCTATACCCACATTTTGCTGAGCTTTGTTGGGTCACTTCAAAACTCAATGAAGGTCCCTGTGCTGATGTAAGTGGACCTTGGAGGGGCTGGCCTTTCAATTCATGTATAATTCGTCCTAATAATTCACTCGACAAGGTGGTAGTTTCTTATAGTTCTAGTGGTGTTAAAAGCAGAGAAGGATCTGGTTTAGTCAGAGGCTTGATTGCTGTTGGTTTATCAGCTTACAGAGGTGTTTATAAATCAGTTAGGGAAGTTTCCCTTGATGTAAGGAAGGTTCTTGAGATCTTAGTTGAGAAAATCAATACAAAAATTCAAGCTGGGAAAGATAGATATCAATATTTTCGTATTTTGTCACAAGTGGCTTATTTAGAAGATATGGTCAACAACTGGGCTTACTCGCTGCTAAGTCTGGAGCAGGATTCTCCCGAGCTTAAAGCAAAGGTTATACCAGCAAGTGGCGGATCATTACACAGTAATCTCATGTTTGAAAATCACCAAACTGAAGATAAGCATATCAACAACACTGCTGCTGCAAACCAGCCACTTCATTCATCCAAAAGTCAGGAGAACGGAACATTATTTGAACAGTCTGAATCTGCAACTGCCGGAAATAATGAAGTGGTGGGTGGAGAATTAGGGATTTCAAAAGACTTAGACTCTGTTGCCCTTTCTGAAAATGGACTTCACACTGCTTGCGAACTGGAGACACAGAATGTCGAGATAATAATGTTTTTTCAAGTAATGGCTGGTCTCCATCATTTGACAATGAAAATACTTGTTGGAGAGTTGGGGTTGAACAGTGATCAGTGGACAGTAGAAGATGTCCACGATGTTGTTGCATCATTATCTGTTGATCTTATTTCAGCAGTTAGAAAATGTTTTATGGCTGAAGATTTCATTGATTTCTCAAACAAAACCTCAAGACATGAAAAACATGGGACATCTCTTGACTGTTTGAACGTGAAGACATGTAATCCTGGTAACCAAGGTAAGGATGTTGTGCCAGTTGAATGTCATTCCCATTCGGCAAGCCAACATGCTACTGCAACAAAAGATACGGCACTGAATGAAGAATCACCGAAGCTTGATCTTAAATTTGTTTTCAGAGATGGTGTACTAGTTCATATGGACCCAGACAAGGATGTCTCACTTCACTGTAAATTTGAAAATTTGTGTCTTTGTTCTCTAAGAGAGTTGATATTAATGACAAAGCGCCCTTTTGATTAG 5145 0.4295 MRSSPSSLGSSSRSGSRLRKKHKRLDAICEEEYNRNHGELNEDDGDLNPDAGVRRSSRVRRAPVLLDASPPPPKKRRRVEKGGISGGVEGANSLGRENRGSGGAWSSRLRSRAGNVGFRVKEEGESPRGKRKLFEGVVGRRGDGEVGGKEELDGLMPKVVKSKRPGRIKATKHEEGHEEDVSHGSLDESKSQDVEELVLSNSEESDSASETELSGEDQMDDSDMDDSDGKAPPMIGNEEGNQIENLDGNVPPMVGNEERSLSNDLQMQECGVNNELSPVERVDKVDGQLDSVKESRDAGDVAEQVNNEGSNGKEVDIDDNVLNEANVGKRDESKHASSDKRGHQRIKEGRRCGLCGGGSDGKPPKRLVQDNGESENEAYSGSSSSEETNYDIWDGFDDEPSWLGRLLGPINDHYGIARIWVHLHCAVWSPEVYFANFGCLKNVRAALFRGRALKCTRCGRRGATTGCRVDRCPKTYHLPCARASGCIFDHRKFLIACTDHRHLFQPRGNKYMARIKKLKARKLMWEIRKRSNEACRKDIGDEERWLENCGEDEEFLKRENKRLHRDLLRIAPVYIGGSDSASENLFQGWESVAGLKDVIRCMKEVVILPLLYPELFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGACARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSIEDRASILSLHTQKWPKPITGSLLEWIARKTPGFAGADLQALCTQAAINALKRNFPLQEVLSLAAEDKHSSCKNIALPSFAVEERDWLEAFFASPLPCSRRDAGNAANDVVCSSLPTRLIPCLLQPLCTLLVSLYLDERLWLPLSISKAVTVIKDVMISALDKKQKPFDRWWLYMDDFLQETNIVYELKKKLTCSGILSADNGVAGSYDTVHGANDNDLKLESSARNHLGMRSGLFTLTNKSGFRILISGNPRSGQRHVASCLLHCFIGNIEIQKIDMATILQEGHGEVVQGIAQILMKCASRQSCIVFLPRIDLWAVDKHFQIAERAGSCLTMRKSCFTRNEAVEKENETGTEKNLSEMTKGQTNTKASYAWMSFIEQVESIGVSTSLMIMATSEVPYTELPQKVREFFKSYQSKDSQSTPLEQTVPRFSVQVDGNFDNDLVINLSAAELLRNVVEQQVQLIHQRSHVHMGAQKGHRTYESIEVCKDKVCQRKEDGSANDNDKGEIQHESFTKVPPTPNSKTLKGKSTVLLAISTLGYQILLYPHFAELCWVTSKLNEGPCADVSGPWRGWPFNSCIIRPNNSLDKVVVSYSSSGVKSREGSGLVRGLIAVGLSAYRGVYKSVREVSLDVRKVLEILVEKINTKIQAGKDRYQYFRILSQVAYLEDMVNNWAYSLLSLEQDSPELKAKVIPASGGSLHSNLMFENHQTEDKHINNTAAANQPLHSSKSQENGTLFEQSESATAGNNEVVGGELGISKDLDSVALSENGLHTACELETQNVEIIMFFQVMAGLHHLTMKILVGELGLNSDQWTVEDVHDVVASLSVDLISAVRKCFMAEDFIDFSNKTSRHEKHGTSLDCLNVKTCNPGNQGKDVVPVECHSHSASQHATATKDTALNEESPKLDLKFVFRDGVLVHMDPDKDVSLHCKFENLCLCSLRELILMTKRPFD 1714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01137 1714 MobiDBLite consensus disorder prediction 1 387 - -
Cca10g01137 1714 Pfam AAA+ lid domain 788 820 IPR041569 -
Cca10g01137 1714 MobiDBLite consensus disorder prediction 1259 1274 - -
Cca10g01137 1714 Gene3D - 763 830 - -
Cca10g01137 1714 SMART AAA_5 623 764 IPR003593 -
Cca10g01137 1714 MobiDBLite consensus disorder prediction 373 387 - -
Cca10g01137 1714 Pfam ATPase family associated with various cellular activities (AAA) 627 762 IPR003959 GO:0005524|GO:0016887
Cca10g01137 1714 ProSitePatterns AAA-protein family signature. 732 750 IPR003960 GO:0005524|GO:0016887
Cca10g01137 1714 MobiDBLite consensus disorder prediction 312 350 - -
Cca10g01137 1714 Pfam PHD-like zinc-binding domain 422 501 - -
Cca10g01137 1714 Gene3D - 589 762 IPR027417 -
Cca10g01137 1714 PANTHER AAA DOMAIN-CONTAINING 1553 1710 IPR045199 -
Cca10g01137 1714 MobiDBLite consensus disorder prediction 1259 1285 - -
Cca10g01137 1714 MobiDBLite consensus disorder prediction 279 301 - -
Cca10g01137 1714 CDD AAA 621 762 - -
Cca10g01137 1714 MobiDBLite consensus disorder prediction 168 194 - -
Cca10g01137 1714 MobiDBLite consensus disorder prediction 115 160 - -
Cca10g01137 1714 MobiDBLite consensus disorder prediction 23 61 - -
Cca10g01137 1714 MobiDBLite consensus disorder prediction 259 273 - -
Cca10g01137 1714 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 396 503 IPR013083 -
Cca10g01137 1714 MobiDBLite consensus disorder prediction 209 224 - -
Cca10g01137 1714 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 589 819 IPR027417 -
Cca10g01137 1714 ProSiteProfiles Extended PHD (ePHD) domain profile. 380 501 IPR034732 -
Cca10g01137 1714 PANTHER AAA DOMAIN-CONTAINING 50 1496 IPR045199 -
Cca10g01137 1714 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 1553 1710 - -
Cca10g01137 1714 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 50 1496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01137 Cca-Chr10 14516102 14524683 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01137 589 824 Calmodulin-binding Proteins AT3G56690 40.756 7.74e-45 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01137 - - ccaj:109789156 3166.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01137 10 14516102 14524683 Cca10g01137 10 14516102 14524683 ECH