Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01136 ATGGTTAAGTCAGAGCACAAGATCAAATCGGAACCATCAAAGGCAATGCAatctttatcctcatcatcagcatcatcatcaGATTCAGATAGCAAGAAGAAGAAGTACAAAGGAGTGAGAATGAGGAGCTGGGGGTCATGGGTGTCAAAGATTAGAGCACCAAACCAGAAAACAAGAATATGGCTTGGCTCTTATTCAACCCCGGAAGCTGCAGCAAGAGCCTATGATGCTGCACTTCTATGCCTTAAAGGCTCCTCAGCAAATCTTAACTTCCCTTCAAGCTCTTCACAATATATTCTAGGAGATGCTGCATTGGCTTCTTCTCCCTCGGATCAAATCGATGATGAAGCCTCACTAATATCATCCTTTGAGGCCTACACTAGTTCTGATCAAGCAAATGAATCAATGGCTGTGATGGAACCTTGGTACACCTTTGCTGATGATCTTCAATCACCCAAGTATGTTGATCAGATGTTAAGTGGTGCTTTCTTTGATGCTGATTCGTCTCATCTGCTTGATGATCTATACGAAGAAAGCGACATTCGTTTGTGGAGCTTCTGTTGA 564 0.4078 MVKSEHKIKSEPSKAMQSLSSSSASSSDSDSKKKKYKGVRMRSWGSWVSKIRAPNQKTRIWLGSYSTPEAAARAYDAALLCLKGSSANLNFPSSSSQYILGDAALASSPSDQIDDEASLISSFEAYTSSDQANESMAVMEPWYTFADDLQSPKYVDQMLSGAFFDADSSHLLDDLYEESDIRLWSFC 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01136 187 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 13 187 - -
Cca10g01136 187 SUPERFAMILY DNA-binding domain 35 93 IPR016177 GO:0003677
Cca10g01136 187 Gene3D AP2/ERF domain 34 93 IPR036955 GO:0003700|GO:0006355
Cca10g01136 187 MobiDBLite consensus disorder prediction 13 27 - -
Cca10g01136 187 Pfam AP2 domain 35 84 IPR001471 GO:0003700|GO:0006355
Cca10g01136 187 ProSiteProfiles AP2/ERF domain profile. 35 92 IPR001471 GO:0003700|GO:0006355
Cca10g01136 187 SMART rav1_2 35 98 IPR001471 GO:0003700|GO:0006355
Cca10g01136 187 PRINTS Ethylene responsive element binding protein signature 36 47 IPR001471 GO:0003700|GO:0006355
Cca10g01136 187 PRINTS Ethylene responsive element binding protein signature 58 74 IPR001471 GO:0003700|GO:0006355
Cca10g01136 187 MobiDBLite consensus disorder prediction 1 38 - -
Cca10g01136 187 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF014 13 187 - -
Cca10g01136 187 CDD AP2 38 94 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01136 Cca-Chr10 14477148 14477839 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01136 36 186 AP2-EREBP Transcription Factor Family AT1G21910 44.809 4.92e-37 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca10g01136 AP2 1.2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01136 - - gmx:100813615 278.1