Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01128 ATGGCTCCAAGAGACAACAGACCCACTGCGCTTGCTGGGCCCGCCCCAGGCCCAACACCGCCCCACGCCACCGCCAAAGAGATCCGCTACAGAGGCGTCAGGAAACGCCCCTGGGGACGCTACGCCGCCGAGATCCGCGACCCGGGCAAGAAAACACGTGTCTGGCTCGGCACCTTCGACACCGCCGAGGAAGCTGCGCGCGCCTACGACACCGCCGCGCGTCAGTTTCGCGGCGCCAAGGCCAAGACCAATTTCCCCACTCCTTCCGAACTCGTTAACAACGCGCGTAGTCCCAGCCAGAGCAGCACGCTCGActcctcctcctcccctccgccgccgctcgacctcaccctcacgccgctctccgccgccgccgccgccctctccttccccgtctctcgtcccgtcctcttcttcGACGCCTTCGCCCGCGCCGAAAACGTGATGAACATCCCCCGCCGCGAGACCTGCGGGTTTGAGCGTCCGGCGGCGGAATTCCGCCGCGTCGATTCCGATTCTTCGTCCGCCGCTCAGCGGCGCGGACTCTTGGATCTCGACCTGAACGTTCCTCCCCTCCCGGAGGTTGCCTGA 591 0.5465 MAPRDNRPTALAGPAPGPTPPHATAKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAARQFRGAKAKTNFPTPSELVNNARSPSQSSTLDSSSSPPPPLDLTLTPLSAAAAALSFPVSRPVLFFDAFARAENVMNIPRRETCGFERPAAEFRRVDSDSSSAAQRRGLLDLDLNVPPLPEVA 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01128 196 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Cca10g01128 196 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Cca10g01128 196 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Cca10g01128 196 MobiDBLite consensus disorder prediction 86 112 - -
Cca10g01128 196 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Cca10g01128 196 MobiDBLite consensus disorder prediction 1 31 - -
Cca10g01128 196 Gene3D AP2/ERF domain 28 87 IPR036955 GO:0003700|GO:0006355
Cca10g01128 196 CDD AP2 29 86 IPR001471 GO:0003700|GO:0006355
Cca10g01128 196 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Cca10g01128 196 Pfam AP2 domain 29 78 IPR001471 GO:0003700|GO:0006355
Cca10g01128 196 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 9 176 - -
Cca10g01128 196 PANTHER ERF FAMILY PROTEIN 9 176 - -
Cca10g01128 196 MobiDBLite consensus disorder prediction 80 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01128 Cca-Chr10 14354830 14356012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01128 22 140 AP2-EREBP Transcription Factor Family AT3G15210 65.693 9.95e-52 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca10g01128 AP2 1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01128 K09286 - gmx:100500601 235.343