Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01126 ATGGACTCCTACCACCACTTGGACCACACTGAAGCTCACCTGCCACCTGGTTTCAGGTTCCACCCTACTGATGAGGAACTCATAACGTACTACCTTCTCAAGAAGGTTCTTGATAGTACCTTCACTGGGAGAGCCATAGCTGAAGTTGACCTTAACAAGAGTGAACCATGGGAGCTCCCAGACAAAGCTAAGATGGGTGAGAAGGAGTGGTACTTCTTCAGCCTACGTGATAGGAAGTACCCAACTGGGTTGAGAACCAATAGGGCTACTGAAGCTGGTTACTGGAAAGCCACTGGGAAAGATAGAGAGATTTATAGCTCCAAAACTTGTTCTTTGGTGGGGATGAAGAAAACCTTGGTTTTCTACCGTGGTAGAGCTCCAAAGGGGGAGAAAAGCAACTGGGTCATGCATGAGTATCGCCTTGAGGGAAAATTTGCTTACCATTATCTTTCTCGAAACTCGAAGGACGAGTGGGTCATATCACGTGTGTTTCAGAAGAGTAATACAAGCAATGGAGGCTCCACCATGTCTGCTACTAGTGGCTCCAAGAAAACAAGAATGAACAGCGCCACCTCTCTCTGCCATGAACCAAGTTCACCCTCCTCTGTGTACCTTCCACCACTTCTAGATTCTTCCCCCTACACGACCACCACCACAACAACCTTCAACGACCGTCACAACTGTTCCTACGACAGCACCACCCCAAAGGAGCACGTGTCCTGTTTCTCCACAATAGCTGCAGCAACTGCTGCCGCTGTCACTGCCAACAACAACTTCACAAGTGCAAGCTTCGATCTCCCTCCTCAGCCTTTTGCTACGGACCCTTTTGCTCGTTTCCCCAGGAACGTTGGTGTAAATGCCTTCCCAAGTTTGAGGTCACTGCAAGACAACCTTCAGTTGCCTTTCCTCTTCTCCCCGGCGGCGCAGCCCTTTTCCGGCGCCGGCGCCGGTGAATTTCTCGGCTGGCCTATGCCGGAGGACCAAAAGCTGGTTGAAGGTGGCCCTAACATAGCACTAGGGGCGTCGGAGCTTGATTGCATGTGGGGTTACTGA 1053 0.5071 MDSYHHLDHTEAHLPPGFRFHPTDEELITYYLLKKVLDSTFTGRAIAEVDLNKSEPWELPDKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRNSKDEWVISRVFQKSNTSNGGSTMSATSGSKKTRMNSATSLCHEPSSPSSVYLPPLLDSSPYTTTTTTTFNDRHNCSYDSTTPKEHVSCFSTIAAATAAAVTANNNFTSASFDLPPQPFATDPFARFPRNVGVNAFPSLRSLQDNLQLPFLFSPAAQPFSGAGAGEFLGWPMPEDQKLVEGGPNIALGASELDCMWGY 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01126 350 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-LIKE 5 346 - -
Cca10g01126 350 Gene3D NAC domain 23 171 IPR036093 GO:0003677|GO:0006355
Cca10g01126 350 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 346 - -
Cca10g01126 350 SUPERFAMILY NAC domain 10 166 IPR036093 GO:0003677|GO:0006355
Cca10g01126 350 Pfam No apical meristem (NAM) protein 15 141 IPR003441 GO:0003677|GO:0006355
Cca10g01126 350 ProSiteProfiles NAC domain profile. 14 166 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01126 Cca-Chr10 14318157 14320603 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01126 4 350 NAC Transcription Factor Family AT5G53950 53.141 9.58e-122 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca10g01126 NAM 2.5e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01126 - - gmx:100805987 559.296