Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01121 ATGACTGATGTGGCAAATCTTGTTGAGGCATCAGGAACAAGATTTAGTTCGTTGGAGCTTATTGGGCAAGGATCATTTGGAGACGTCTATAAAGCGTTTGATAGAGAGCTCAACAAATTAGTCGCCATCAAAGTAATTGATTTGGAAGAATCAGAGGATGAAATTGATGATATCCAGAAGGAAATTTCTGTTCTATCCCAATGTCGATGTCCATACATTACTGAGTATTATGGTTCTTATATCAATCAAACTAAACTTTGGATAATCATGGAATACATGGCTGGTGGCTCAGTTGCTGATCTACTTCAATCAGGTCCTCCCCTTGATGAAATGTCAATTGCCTGCATTCTACGTGACTTGTTGCATGCTATTGATTATCTGCATAGTGAAGGAAAAATTCATAGAGACCTTAAAGCTGCAAACATTTTATTAACTGAGATCGGTGATGTAAAGGTTGCAGATTTTGGTGTTTCTGCTCAATTAACGAGGACTATATCAAGGAGAAAGACATTTGTAGGAACACCATTCTGGATGGCACCTGAAGTTATTCAAAATACAGATGGATATAATGAAAAGGCAGATATTTGGTCTCTAGGGATCACTGCAATTGAGATGGCAAAAGGGGAGCCTCCACTTGCTGATCTTCACCCGATGAGAGTGCTTTTCATCATACCTCGTGAGAATCCTCCACAGCTTGATGATCATTTTTCTCGTTCATTGAAAGACTTTGTTTCACTATGCTTAAAGAAGGTTCCTGCTAGGCCAAGTGCTAAGGAACTTCTCAAAGATCGTTTTATTCGAAATGCTAAGAAGAATCCAAAGCTTTCAGAAAGAATAAGGGAACGTCCAAAGTACCAAATAAAGGAAGAGCAAGAAGAGACACCTAGAAATAGCTCAAGAGGGAGGGGTGAGGCAACAGATACAGTAAAGGTGGCTAGAGATTTAAGAGGTGAAGAAAATAATCGACCCAGGGATCAGAATCAAACCCTAAAAAGTGTTGGATGGGACTTCAACATTGGTGGATCACAGGGTACTGGAACCTCTCGTAATGTTTCTCGACCACCTCAATTTAGAGATAAGAAAACTGAAGTTTCACATAACCAGCTTACCCAAAGAAAAGCTCCAGAAAATGTTTATCAAGGGGGATCCACCAATAGAATTGCATCAAATGAGTCACTTGAAAGTTCTTCTAGAGGAGATCTTAAAGCCCCCCACCATGATGAGTATTTGGATAATCACCTTGAAGATGGTGACTTATTTGGGAATGAAATAGGAACTGTTGTTGTTCGATCTCCAAAAGGATCAAGGTCATCTGTGTTTCGTGACCAGAACTCTCAGTCTAGCAGCAGCCATGCTTCTTTTGAAGATGCTTCTACAAGTGGAACTGTTGTTTTACGTAGCCAGCAGAATGACTCTGATTCTCCACAGACACCAAGGTCTCGATTGGGAATTCATGACAAAAAATCAAATGCCTTAACAGAAGATAGTGCAGCAAATCTTGCTGAGGCAAAGGCTGCTATCTTGAGGAAAAAAAATGCTCAAGAGAAATTTCCACGAGGAAAAATCAACAACGATAGACATGGGAGCAAAAGAGATCAAAAGTCTAGCAGCTCTGATTCTTCAAGACCACATGGTGAATATGGTGCAAACAAGGGCTTGTTAAGATCACATCATGCTATTGGTGACGCAGAAAATTCTAAGATAATGTCATCATCTGCGCCATTATCTGTTTTACTTATTCCTTCATTAAAAGAGGCTATTGCTGATGATTCAGAAGGCTCGATTGTGCGATCGGTTATCAATTCTTTTATAAACATGGAAGGCACAAAACCTAAATCTTGTGATGTTGTTGTTAAAAAGTTGCTTCAACGGTTGGCCAGTTCAAAGGAAGATTCATTAAAGGACCTGCAGGGACTAGCAAGCCAACTATTCAGCAAGACCAATTCAACTGAAGAAACCGAAAATGCTAATAGGAAGAAACAACAAAACAAGGAACATCATGCAAATAGCAATTTGAGTCCACTCGCAAGTTTTCTTCTCTCAAGATGGCAAGGCCAAACCTCACAAATATAA 2073 0.397 MTDVANLVEASGTRFSSLELIGQGSFGDVYKAFDRELNKLVAIKVIDLEESEDEIDDIQKEISVLSQCRCPYITEYYGSYINQTKLWIIMEYMAGGSVADLLQSGPPLDEMSIACILRDLLHAIDYLHSEGKIHRDLKAANILLTEIGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNTDGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDDHFSRSLKDFVSLCLKKVPARPSAKELLKDRFIRNAKKNPKLSERIRERPKYQIKEEQEETPRNSSRGRGEATDTVKVARDLRGEENNRPRDQNQTLKSVGWDFNIGGSQGTGTSRNVSRPPQFRDKKTEVSHNQLTQRKAPENVYQGGSTNRIASNESLESSSRGDLKAPHHDEYLDNHLEDGDLFGNEIGTVVVRSPKGSRSSVFRDQNSQSSSSHASFEDASTSGTVVLRSQQNDSDSPQTPRSRLGIHDKKSNALTEDSAANLAEAKAAILRKKNAQEKFPRGKINNDRHGSKRDQKSSSSDSSRPHGEYGANKGLLRSHHAIGDAENSKIMSSSAPLSVLLIPSLKEAIADDSEGSIVRSVINSFINMEGTKPKSCDVVVKKLLQRLASSKEDSLKDLQGLASQLFSKTNSTEETENANRKKQQNKEHHANSNLSPLASFLLSRWQGQTSQI 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01121 690 MobiDBLite consensus disorder prediction 432 479 - -
Cca10g01121 690 Gene3D Transferase(Phosphotransferase) domain 1 11 303 - -
Cca10g01121 690 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 689 - -
Cca10g01121 690 Pfam Protein kinase domain 16 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01121 690 MobiDBLite consensus disorder prediction 644 671 - -
Cca10g01121 690 MobiDBLite consensus disorder prediction 368 397 - -
Cca10g01121 690 MobiDBLite consensus disorder prediction 326 353 - -
Cca10g01121 690 MobiDBLite consensus disorder prediction 509 539 - -
Cca10g01121 690 MobiDBLite consensus disorder prediction 509 554 - -
Cca10g01121 690 SMART serkin_6 15 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01121 690 MobiDBLite consensus disorder prediction 272 405 - -
Cca10g01121 690 MobiDBLite consensus disorder prediction 306 325 - -
Cca10g01121 690 MobiDBLite consensus disorder prediction 652 666 - -
Cca10g01121 690 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 1 689 - -
Cca10g01121 690 SUPERFAMILY Protein kinase-like (PK-like) 14 289 IPR011009 -
Cca10g01121 690 MobiDBLite consensus disorder prediction 272 300 - -
Cca10g01121 690 ProSiteProfiles Protein kinase domain profile. 15 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01121 690 MobiDBLite consensus disorder prediction 432 493 - -
Cca10g01121 690 CDD STKc_MST3_like 14 286 - -
Cca10g01121 690 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Cca10g01121 690 Coils Coil 41 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01121 Cca-Chr10 14251102 14262995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01121 1 689 MAP Kinase Kinase Kinase Kinase AT3G15220 61.373 0.0 799
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-YSK Cca10g01121 Pkinase 1.3e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01121 K08838 - gmx:100815042 1112.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01121 10 14251102 14262995 Cca10g01121 10 14251102 14262995 ECH