Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01120 aTGGTGGGCTCAGGAGCAGGAACAGATAGAAGCAAAGAAGCTGTTGGGATGATGGCCCTTCATGAGGCCCTCAGAAGAGTCTGTCTCAACTCAGACTGGACTTACTCTGTCTTCTGGACCATTCGTCCTCGCCCGTATTtctctctctctctctctctctctctcttattttctttctctctttctctctctaacccctcttctcGCAGGAGACTCCGAGGTGGTAATGGCTGCAAGGTCGGGGACGACAACGGCACCTTGATGTTGATGTGGGAAGATGGGTTTTGCCGAGGAGGTTGTCTGGAAGATGTTGATGGAGAGGATCCTGTCAGGAAGGCCTTCAGCAAGATGTCCATTCAGTTGTATAATTATGGAGAAGGGTTGATGGGGAAAGTTGCATCTGATAAGTGCCACAAGTGGGTCTTTAAAGAGCCCACAGAATGTGAGCCCAATATCTCCAACTACTGGCAGAGCTCCTTTGATGCTCTTCCACCTGAATGGACAGACCAGTTTGAGTCAGGCATTCAGACCATAGCTGTAATTCAAGCTGGCCATGGCCTTCTCCAACTTGGTTCTTGCAAGATTATTCCTGAAGACCTCCATTTTGTGCTAAGAATGAGACACACTTTTGAATCCCTTGGCTACCAATCTGGCTTCTACCTCTCCCAACTCTTCTCTTCAACGAGGAACACTTCCTCCTCCACTTCTCTTCCTTCAAAACCATCCACCATTCCAATTAGGCCACCTCCTCCACTCTTCAACTGGGGTCACCAGAGGCCACTCACTTCTGCCACCTCCATGCTATCCTCTCCAAATTTCCAACAACATGCAGCTAGGCTTGGTTTCCCAAAAGATGAGGCACACATGTTTCTCATGCCACATGTATCATGCGAAGGTGCAAGAATTGAGGATGTGATGGGGGAGCATGAAAACGACATCAAATGGCCCAATGGCTTGTCTTTCTTCAATGCCCTCACTGGAAGATCAGATGATGCTAAACTTTTGTTCAATCCTGAGAGCTTAGGTAACAAACCATGTGATCAGAGTCAACATCAACATCACCACCCTCTTGGTCAAAATCCCAGTTCTGATGTGCAAAATGCCAACACAAATGAGTTCTTGAGCTTGGAAAGCCACCAAGATGATGCAAGGAAAATGGACAAGTTCAAGAGGAGCTTCACTCTACCTGCAAGAGTGGCTTCATCATCTTCTTCCACTTCAATGGATCACCATCAACAAGGTGTGGAGTATAGGAATAATTCAGAAGGAGGTATGTACCCGGATGTCATGGAGACCTTTTTGGAGTGA 1308 0.4495 MVGSGAGTDRSKEAVGMMALHEALRRVCLNSDWTYSVFWTIRPRPYFSLSLSLSLLFSFSLSLSNPSSRRRLRGGNGCKVGDDNGTLMLMWEDGFCRGGCLEDVDGEDPVRKAFSKMSIQLYNYGEGLMGKVASDKCHKWVFKEPTECEPNISNYWQSSFDALPPEWTDQFESGIQTIAVIQAGHGLLQLGSCKIIPEDLHFVLRMRHTFESLGYQSGFYLSQLFSSTRNTSSSTSLPSKPSTIPIRPPPPLFNWGHQRPLTSATSMLSSPNFQQHAARLGFPKDEAHMFLMPHVSCEGARIEDVMGEHENDIKWPNGLSFFNALTGRSDDAKLLFNPESLGNKPCDQSQHQHHHPLGQNPSSDVQNANTNEFLSLESHQDDARKMDKFKRSFTLPARVASSSSSTSMDHHQQGVEYRNNSEGGMYPDVMETFLE 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01120 435 MobiDBLite consensus disorder prediction 342 367 - -
Cca10g01120 435 MobiDBLite consensus disorder prediction 339 367 - -
Cca10g01120 435 MobiDBLite consensus disorder prediction 396 419 - -
Cca10g01120 435 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 108 210 IPR025610 -
Cca10g01120 435 PANTHER GB|AAF34833.1 1 435 IPR044170 -
Cca10g01120 435 MobiDBLite consensus disorder prediction 396 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01120 Cca-Chr10 14208795 14210837 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01120 21 242 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 29.148 1.11e-17 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01120 - - gmx:100814723 708.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01120 10 14208795 14210837 Cca10g01120 10 14208795 14210837 ECH