Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01118 ATGCTCCCAAAGACAAGGCACTCCCCGTTTTCTTCTTCTTCATCATCATTGTCAGCACTCAGAATGGAGATCAAGAGTGGAGAGAGGAGGCAAGTGTCAATTGAGAAGGTGAGGAGAGACAGCACAGTTGAAGTGGAAGATGAAGAAGAGGAGGATGAGAGTGTAGCTTGTGGTGAGGGTGGTCTTGGAGAAGATGAGAAGAAGAAAGGTGGTGGAGGGTGTGGGAGAAGAGGGTCAAGTGGGGGTGGAGGAGTTTCTCCACCTTCTTGTCAGGCAGAGATGTGTGGTGCTGATTTGACTTTTGCAAAGAGGTACCATCGCCGCCATAAGGTGTGTGAGCCTCATTCCAAGGCTCCTTTTGTGATGGTTGCAGGACTGAGGCAGAGGTTTTGCCAGCAATGTAGCAGGTTCCATGAGCTAGCAGAATTTGATGAAGCTAAAAGAAGCTGCCGGAGACGCTTAGCCAGGCACAACGAGCGGCGCCGGAAAAGCAATGCTGAAAATTGCAATGAAGGGTGCAGTGGCAACAAAGGACAGCAACCTACAGAAAGCCACTGCAGAAATGCTGATGACTGGGGAAGAATACAAATGAATATAACTAGGAATTCTGGTTACAATTCCTTTCATATAATATAA 636 0.478 MLPKTRHSPFSSSSSSLSALRMEIKSGERRQVSIEKVRRDSTVEVEDEEEEDESVACGEGGLGEDEKKKGGGGCGRRGSSGGGGVSPPSCQAEMCGADLTFAKRYHRRHKVCEPHSKAPFVMVAGLRQRFCQQCSRFHELAEFDEAKRSCRRRLARHNERRRKSNAENCNEGCSGNKGQQPTESHCRNADDWGRIQMNITRNSGYNSFHII 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01118 211 MobiDBLite consensus disorder prediction 23 43 - -
Cca10g01118 211 ProSiteProfiles Zinc finger SBP-type profile. 87 164 IPR004333 GO:0003677
Cca10g01118 211 Pfam SBP domain 90 163 IPR004333 GO:0003677
Cca10g01118 211 MobiDBLite consensus disorder prediction 1 88 - -
Cca10g01118 211 MobiDBLite consensus disorder prediction 44 59 - -
Cca10g01118 211 MobiDBLite consensus disorder prediction 166 187 - -
Cca10g01118 211 Coils Coil 140 160 - -
Cca10g01118 211 MobiDBLite consensus disorder prediction 1 21 - -
Cca10g01118 211 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 36 210 - -
Cca10g01118 211 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 36 210 IPR044817 GO:0003677
Cca10g01118 211 SUPERFAMILY SBT domain 88 168 IPR036893 GO:0003677|GO:0005634
Cca10g01118 211 Gene3D - 81 151 IPR036893 GO:0003677|GO:0005634
Cca10g01118 211 MobiDBLite consensus disorder prediction 168 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01118 Cca-Chr10 14194522 14196032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01118 75 178 SBP-box Gene Family AT1G53160 64.423 3.46e-37 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Cca10g01118 SBP 2.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01118 - - gmx:100815775 278.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01118 10 14194522 14196032 Cca08g02448 08 58662369 58664956 ECH
Cca10g01118 10 14194522 14196032 Cca10g01118 10 14194522 14196032 ECH