Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01102 ATGTGTTGTTGTTGTACTTGGTCTACATGCAACTCTAACTGGATAAAGATGGAGGGTTCTTCTGGGTCAGCTTTTCAGAATTCTAACAGTTCTAGGGCTTTGAATAGTTCTGGAGTCTCAGATAGGAACCAAAGGCTTCATTGTCCTGAAAGGAACCCCTTCTCGGGCGAGGCGTCGCAGGATTCGGGGTTTAAGAAGGAAAGGGATAGGGTTCTGTTGGCTCAAGGTGATCAAGCTAGACATCTGGGTGGGTTTTCTGGGTTGTGTGAGGATGGAGTGGAGGTTGACCCCTTTGTTTGTGCTGTAGAATGGGGTGATATTAGCTTGAGGCAATGGTTGGATAAGCCTGAAAGATCAGTAGATGCCTTTGAATGCTTGCACATTTTTAGGCAAATAGTGGAAATTGTTAGTGTGGCGCATTCTCAAGGAGTTGTAGTTCACAATGTGAGGCCTTCCTGCTTCGTCATGTCGTCTTTCAACCATATCTCGTTTATTGAATCGGCATCTTGTTCGGATACTGGCTCGGATTCTTTAGGAGAAGGGTTGAACAACCAAGGTGGTGGTGAGGTTAAAACTCCGATGTCTCACTGTCCCCGTGATATGCATCAGCAAAGCTTGGGAAGTGAAGATTTTATGCATGTCAAGACTTCAACAACCACTGCTCGGTCGGATTCTAGTTGCATGCTGTCAAGTGCTGTGTATGCGGCACGTGCATCGTTGATagaagaaacagaagaaaataaaatgaaagataggagaaaggatgaagaagtagatggaaagaagCAATCATTTCCAATGAAACAGATACTGCTAATGGAAATGAGTTGGTACACTAGTCCTGAAGAGGTTGCTGGTGAATCTAGTTCTTGTGCTTCAGACGTTTACCGATTGGGAGTTCTCCTTTTTGAGCTATTTTGTCCACTCAGCTCCAGAGAAGAAAAGAGTAGAACCATGTCTAGCCTTAGACACAGAGTTCTTCCTCCACAGTTACTTCTAAAGTGGCCTAAAGAAGCTTCATTTTGCTTATGGTTACTGCATCCTGACCCTAGTAGTCGTCCAACACTCGGGGAGTTGTTGCAAAGCGAGTTCCTTAATGAACAGAGAGATGATATGGAAGAACGTGAAGCAGCGATAGAGCTGAGACAAAGGATAGAGGATCAGGAGTTGCTTTTAGAATTCCTTTTATTACTTCAACAGAGAAAACAGGAAGTTGCTGAGAAGTTGCAACACACTATCTCTTTTCTGTGTTCAGATATTGAAGAAGTGACCAAGCAGCAAACTAGATTTAAAGAGATTACTGGTGCTGAACCAGGGAGTGACGATCGATCAGCATCAAGTTTCCCATCAGTGACAGTTGTTGACAGTGAGGATTATGCTTATCTAGGGACTAGAAAACGAGTCAGACTAGGGATGCATGTTAAAGACATTGAGGAATGTGATGATGACGTAGGGGATAATCAAAGAAGTAACGAAAGTCTTCTTTCAAAAAGTTCACGGCTAATGAAGAACTTTAAGAAACTTGAGTCAGCATACTTTTTAACGCGATGTAGACCAGCCTATTCCTCTGGGAAACTGATGGTGAGACATCCTCCTGTAACAAGTGATGGTAGAGGCTCTGTTGTGAGTGAAAGAAGTTGCATCAATGACTTGAAATCAAAAGAGCAGTGTAGGGAGGGTGCAAGTGCTTGGATAAACCCTTTTCTTGAGGGTTTGTGCAAGTATTTATCATTCAGTAAGCTAAGGGTTAAGGCTGATCTAAAGCAAGGAGATCTCTTGCATTCTTCCAACCTAGTATGCTCACTCAGTTTTGATCGCGACGGAGAATTTTTTGCTACCGCCGGAGTGAATAAGAAAATTAAAGTGTTTGAATGCGATGCGATCATAAATGAGGATCGTGACATCCACTATCCAGTTGTGGAGATGGGTAGCAGGTCAAAGTTAAGCAGTATTTGTTGGAATACATACATCAAGAGTCAAATTGCTTCAAGTAACTTTGAAGGTGTTGTGCAGTTATGGGATGTGACAAGAAGTCAAGTACTCTCTGAAATGAGGGAGCATGAGCGGCGGGTGTGGTCCATCGATTACTCGTCAGCAGACCCTACAATGTTGGCAAGTGGGAGCGATGATGGTTCTGTCAAGCTATGGAGTATCAATCAGGGAGTTAGTGTTGGTACCATCAAAACCAAGGCAAATGTGTGCTGTGTTCAGTTCCCTGTGGATTCTGCTCGTTTCCTTGCATTTGGTTCGGCGGATCACCGAATATATTACTATGATCTTCGCAACCTAAAAATGCCACTTTGTACTTTAGTTGGACATAACAAGACTGTCAGCGACATCAAGTTTGTAGACACTGTGAACCTTGTCTCTGCATCCACAGATAACACTTTAAAGCTTTGGGATTTGTCTACATGTGCATCTCGAGTTATAGACTCACCGATTCAATCATTCACAGGTCACATGAATGTAAAGAACTTTGTGGGATTATCAGTATCTGATGGTTACATTGCTACTGGTTCAGAGACTAATGAGGTGTTCATATACCACAAAGCCTTCCCCATGCCAGCATTGTCATTCAAGTTTCAGAACACAGACCCTCTTTCTGGTAATGATGTGGATGATGCTGCGCAGTTCGTTTCGTCTGTTTGTTGGCGTGGCCAGTCATCTACCTTGCTTGCTGCAAATTCCACAGGGAATGTCAAGATTCTGGAGATGGTTTAA 2721 0.4237 MCCCCTWSTCNSNWIKMEGSSGSAFQNSNSSRALNSSGVSDRNQRLHCPERNPFSGEASQDSGFKKERDRVLLAQGDQARHLGGFSGLCEDGVEVDPFVCAVEWGDISLRQWLDKPERSVDAFECLHIFRQIVEIVSVAHSQGVVVHNVRPSCFVMSSFNHISFIESASCSDTGSDSLGEGLNNQGGGEVKTPMSHCPRDMHQQSLGSEDFMHVKTSTTTARSDSSCMLSSAVYAARASLIEETEENKMKDRRKDEEVDGKKQSFPMKQILLMEMSWYTSPEEVAGESSSCASDVYRLGVLLFELFCPLSSREEKSRTMSSLRHRVLPPQLLLKWPKEASFCLWLLHPDPSSRPTLGELLQSEFLNEQRDDMEEREAAIELRQRIEDQELLLEFLLLLQQRKQEVAEKLQHTISFLCSDIEEVTKQQTRFKEITGAEPGSDDRSASSFPSVTVVDSEDYAYLGTRKRVRLGMHVKDIEECDDDVGDNQRSNESLLSKSSRLMKNFKKLESAYFLTRCRPAYSSGKLMVRHPPVTSDGRGSVVSERSCINDLKSKEQCREGASAWINPFLEGLCKYLSFSKLRVKADLKQGDLLHSSNLVCSLSFDRDGEFFATAGVNKKIKVFECDAIINEDRDIHYPVVEMGSRSKLSSICWNTYIKSQIASSNFEGVVQLWDVTRSQVLSEMREHERRVWSIDYSSADPTMLASGSDDGSVKLWSINQGVSVGTIKTKANVCCVQFPVDSARFLAFGSADHRIYYYDLRNLKMPLCTLVGHNKTVSDIKFVDTVNLVSASTDNTLKLWDLSTCASRVIDSPIQSFTGHMNVKNFVGLSVSDGYIATGSETNEVFIYHKAFPMPALSFKFQNTDPLSGNDVDDAAQFVSSVCWRGQSSTLLAANSTGNVKILEMV 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01102 906 ProSiteProfiles Protein kinase domain profile. 10 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01102 906 SUPERFAMILY WD40 repeat-like 594 903 IPR036322 GO:0005515
Cca10g01102 906 SUPERFAMILY Protein kinase-like (PK-like) 85 364 IPR011009 -
Cca10g01102 906 Coils Coil 362 382 - -
Cca10g01102 906 Gene3D Transferase(Phosphotransferase) domain 1 106 377 - -
Cca10g01102 906 PANTHER PROTEIN SPA1-RELATED 2 17 906 IPR044630 GO:0009640
Cca10g01102 906 Pfam WD domain, G-beta repeat 680 717 IPR001680 GO:0005515
Cca10g01102 906 Pfam WD domain, G-beta repeat 594 623 IPR001680 GO:0005515
Cca10g01102 906 Pfam WD domain, G-beta repeat 766 801 IPR001680 GO:0005515
Cca10g01102 906 ProSitePatterns Trp-Asp (WD) repeats signature. 788 802 IPR019775 -
Cca10g01102 906 SMART serkin_6 14 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01102 906 Gene3D - 570 906 IPR015943 GO:0005515
Cca10g01102 906 ProSiteProfiles Trp-Asp (WD) repeats profile. 684 726 IPR001680 GO:0005515
Cca10g01102 906 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 770 804 - -
Cca10g01102 906 ProSiteProfiles Trp-Asp (WD) repeats profile. 770 804 IPR001680 GO:0005515
Cca10g01102 906 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 684 721 - -
Cca10g01102 906 PRINTS G protein beta WD-40 repeat signature 661 675 IPR020472 -
Cca10g01102 906 PRINTS G protein beta WD-40 repeat signature 704 718 IPR020472 -
Cca10g01102 906 PRINTS G protein beta WD-40 repeat signature 788 802 IPR020472 -
Cca10g01102 906 PANTHER PROTEIN SPA1-RELATED 3 17 906 - -
Cca10g01102 906 SMART WD40_4 589 624 IPR001680 GO:0005515
Cca10g01102 906 SMART WD40_4 810 849 IPR001680 GO:0005515
Cca10g01102 906 SMART WD40_4 763 801 IPR001680 GO:0005515
Cca10g01102 906 SMART WD40_4 854 904 IPR001680 GO:0005515
Cca10g01102 906 SMART WD40_4 677 717 IPR001680 GO:0005515
Cca10g01102 906 SMART WD40_4 634 674 IPR001680 GO:0005515
Cca10g01102 906 SMART WD40_4 720 759 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01102 Cca-Chr10 13952640 13962101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01102 674 848 Miscellaneous Gene Families AT5G08390 24.294 2.72e-06 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Cca10g01102 WD40 0.00016 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01102 - - gmx:100811457 1669.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01102 10 13952640 13962101 Cca04g01425 04 18942101 18949158 ECH
Cca10g01102 10 13952640 13962101 Cca10g01102 10 13952640 13962101 ECH