Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01101 ATGGGTTGCATGTGTTGCAAGCCCTCTGCCATTGAAGATAGTAAGGAGAGTCCACGGGAGCGGTTAACGAGCAAGGCTGTGTCGGAATCGCGTGTATCTAGAGGGACTTCTTCGAGGAGGGTGGAAGCAAATCGGATAAAGGATAGATATGATAACAATGATGGAAGAACTGCATTGATTGATAAGCAAGGGAATGGTTCTGTTAGAGTGCAAGGCGATAGTTTTGATAGGAAAAGGGAGAAAATGGAATATGCTGTTGTTGCTCAACAACATCCAGGGATTGGTAGTGTTCCCAAGGCAATGGAAGGTGAGCAGGTTGCAGCTGGATGGCCCTCATGGCTGGCTGCAGTGGCTGGAGAGGCTATCAAGGGATGGCTGCCACGGCGTGCAGATTCTTTTGAGAAATTGGATAAAATTGGACAGGGAACTTACAGCAATGTTTATAGAGCTCGTGATCTTGAACAAAGAAAGATTGTTGCTCTGAAAAAAGTTAGGTTTGATAATCTTGAACCTGAAAGTGTTCGCTTCATGGCAAGGGAAATTCATATTCTACGAAGGCTTGATCATCCAAATGTTATAAAACTGGAAGGCTTGGTTACATCAAGGATGTCTTGCAGCTTATACCTTGTTTTTGAGTACATGGAACATGACTTGGCTGGGCTTGCTTCACATCCTGGGCTGAAGTTTACAGAAGCACAGGTTAAGTGTTACATGCAGCAACTTTTACGTGGGCTAGATCACTGCCACAGCTGTGGTGTACTGCACCGTGATATTAAGGGTTCCAACCTTCTGATTGACAACAATGGGATATTGAAAATTGCAGACTTTGGTTTGGCAAGCTTTTTTGATCCCAATCATGCTCAACCACTGACAAGCCGAGTTGTCACTCTTTGGTATAGGCCGCCCGAGCTTTTGCTTGGAGCCACTTATTATGGCACTGCTGTAGATTTATGGAGTACAGGTTGCATTCTTGCTGAGCTGTATGCTGGCAGGCCTATAATGCCTGGGAGAACCGAGGTGGAGCAATTGCATAAAATTTTTAAACTTTGTGGTTCACCTTCTGAGGACTATTGGAGAAAATCAAAGTTGCCTCATGCAACAATATTTAAGCCTCAACAGCCCTATAGGCGTTGTGTTACTGAAACATTCAAGGACTTTCCTGCACCTGCAATAGAATTGATAGAGACCCTTTTGTCCATAGATCCTGCTGATCGTGGAACTTCAGCATCTGCTTTGAATAGTGAGTTCTTCTCAACAAAGCCTCTACCTTGTGATCCATCAAGTTTGCCAAAGTATCCTCCTAGCAAAGAATTTGATGCCAAAGTGCGGGATGAAGAAGCTAGAAGACAAGGAGCAGCAGGAAGCAAGGGCCAGAGACATGATCTTGAGAGAAGAGGTGCAAGAGAATCACGAGCGGTTCCTGCACCTGATGCCAATGCTGAACTGGCCTTGTCAATGCAGAAGAGACAAGGGCAGGCTAATTCTCAGAGCAGGAGTGAGAAGTTTAACCCTCATGCTGAAGAAGTTGCCTCTGGATTTCCTATTGATCCCCCTAGACCATCACAAGCTGCAGGAGTCATTGCGGATCCCCCGGTTCATCAACATAAAAGAGCCTCCCATTCAGGTCCATTGACTCACCGTGCTGCGTGGGCTAAAGCTGGCAAGAACCAGGACGATGCTCCAAAGATTTCAATGGGGGGTGACTTATCAACAGTTTCAGGCTTAGTTGCAGCAAGGAGGAGTATGCTGTCGGACGATCGCAGAGAAAGGTCTGGATCATCACAACCAGAGGCCCCAAAACTAATAAGCAGGTTCCCAGGATCCTTCAAGGAGGCCTCTGAGCAGGATCAGAAGCATCATGCACATGGTTCTCAAAAGGAAGAAGGGAGAGGCAGCAACAAAGACTCAAATCTTGTTGGTTATGGGTCCAAGGGTCATAAAATCCATTATTCTGGTCCTTTGCTAGTTCCATCAAGCAACATGGATCAGATGTTGAAGGACCACGACCGCCATATCCAAGAGGCGGTTCGAAGAGCTCGATTGGACAAGGCAAAGATGAGAAGACTCCAAGCTGAGGGGAGCCAGATAACCAATTCATTATTTGTTTCTGGTCGTTGA 2118 0.4608 MGCMCCKPSAIEDSKESPRERLTSKAVSESRVSRGTSSRRVEANRIKDRYDNNDGRTALIDKQGNGSVRVQGDSFDRKREKMEYAVVAQQHPGIGSVPKAMEGEQVAAGWPSWLAAVAGEAIKGWLPRRADSFEKLDKIGQGTYSNVYRARDLEQRKIVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGLKFTEAQVKCYMQQLLRGLDHCHSCGVLHRDIKGSNLLIDNNGILKIADFGLASFFDPNHAQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAELYAGRPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSKLPHATIFKPQQPYRRCVTETFKDFPAPAIELIETLLSIDPADRGTSASALNSEFFSTKPLPCDPSSLPKYPPSKEFDAKVRDEEARRQGAAGSKGQRHDLERRGARESRAVPAPDANAELALSMQKRQGQANSQSRSEKFNPHAEEVASGFPIDPPRPSQAAGVIADPPVHQHKRASHSGPLTHRAAWAKAGKNQDDAPKISMGGDLSTVSGLVAARRSMLSDDRRERSGSSQPEAPKLISRFPGSFKEASEQDQKHHAHGSQKEEGRGSNKDSNLVGYGSKGHKIHYSGPLLVPSSNMDQMLKDHDRHIQEAVRRARLDKAKMRRLQAEGSQITNSLFVSGR 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01101 705 Gene3D Phosphorylase Kinase; domain 1 120 215 - -
Cca10g01101 705 MobiDBLite consensus disorder prediction 12 27 - -
Cca10g01101 705 CDD STKc_CDK9_like 133 417 - -
Cca10g01101 705 Gene3D Transferase(Phosphotransferase) domain 1 216 456 - -
Cca10g01101 705 MobiDBLite consensus disorder prediction 485 500 - -
Cca10g01101 705 SUPERFAMILY Protein kinase-like (PK-like) 127 425 IPR011009 -
Cca10g01101 705 MobiDBLite consensus disorder prediction 423 568 - -
Cca10g01101 705 PANTHER CYCLIN-DEPENDENT KINASE 1 687 - -
Cca10g01101 705 Coils Coil 672 692 - -
Cca10g01101 705 MobiDBLite consensus disorder prediction 611 633 - -
Cca10g01101 705 Pfam Protein kinase domain 133 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01101 705 ProSiteProfiles Protein kinase domain profile. 133 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01101 705 MobiDBLite consensus disorder prediction 436 471 - -
Cca10g01101 705 MobiDBLite consensus disorder prediction 1 41 - -
Cca10g01101 705 ProSitePatterns Serine/Threonine protein kinases active-site signature. 253 265 IPR008271 GO:0004672|GO:0006468
Cca10g01101 705 ProSitePatterns Protein kinases ATP-binding region signature. 139 162 IPR017441 GO:0005524
Cca10g01101 705 SMART serkin_6 133 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01101 705 PANTHER CELL DIVISION PROTEIN KINASE 1 687 - -
Cca10g01101 705 MobiDBLite consensus disorder prediction 581 643 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01101 Cca-Chr10 13925547 13933012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01101 125 474 Core Cell Cycle Gene Families AT5G10270 51.913 7.51e-121 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Cca10g01101 Pkinase 1.3e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01101 - - gmx:100792173 1341.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01101 10 13925547 13933012 Cca10g01101 10 13925547 13933012 ECH