Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01093 ATGGCCGAGTTCACAGAATTGTTCCCCGTGGACCAAAATCTCGATGGTTTGATGCACATGTATGTGTATGTCATCACTTTCGATCTTCCAACTCTACTCATCGTTTTCACCATACTCACGTTGTTATTCTTCATCTTGTATCAAATTCTCAATGGCTTGTTCTTCTGGTTGATAGAAATGAGGCCAATTGAACATGATCTTGAAGAGGGTGTTACTCGTGATGAGGTTACCATCTTTCATGCAATTTTTAACGAGAAAAGAGGACAAAGGCTTAGAGCATGCAAGAAGTTGCCTCCATTGGTGAATTATGGAATGCATGGTGTGACAAGAAGTTGTGGAGAATGTGCCATTTGCTTGGAAGAATTCCAAGTTGGTCAATTCTGTCAAGTTTTTCCTCTTTGCAAGCACATTTTTCATTCAGATTGCATAGACCACTGGCTGCAAAAGAAATTAACCTGCCCAATATGTCGTAGTTGTATATAG 483 0.3996 MAEFTELFPVDQNLDGLMHMYVYVITFDLPTLLIVFTILTLLFFILYQILNGLFFWLIEMRPIEHDLEEGVTRDEVTIFHAIFNEKRGQRLRACKKLPPLVNYGMHGVTRSCGECAICLEEFQVGQFCQVFPLCKHIFHSDCIDHWLQKKLTCPICRSCI 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01093 160 SMART ring_2 115 156 IPR001841 -
Cca10g01093 160 PANTHER - 17 71 - -
Cca10g01093 160 PANTHER - 79 160 - -
Cca10g01093 160 SUPERFAMILY RING/U-box 114 160 - -
Cca10g01093 160 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 17 71 - -
Cca10g01093 160 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 79 160 - -
Cca10g01093 160 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
Cca10g01093 160 Pfam Ring finger domain 114 157 IPR001841 -
Cca10g01093 160 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 160 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01093 Cca-Chr10 13841283 13841765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01093 32 158 C3H Transcription Factor Family AT1G53010 33.117 1.92e-18 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01093 - - gmx:102660073 261.536