Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01073 ATGAGCAAAGCCCTCGGAGACCAACAACAACAAGAAGACGACCAAGACTGCTTCTACGACTCACACGACCGTTTGCTCTCCCTCTCCTCCTCTTGCTCCTGCTCCAATTCTAACTCcgacgaagacaacgacaacaacgacgcctacgcgctcaacaactacgacATATGGATCTCCCACCCTTCCTCCGTCTCCGAGCGCCGCACGCGCCTCTTTCTCTCACTCGGcctcacgcgcccaaaccctcaccctcaccctcaccctcaccctcaccctcgcgatcgcctttcgcctctccgatccaaatccgacgccgcaaaccctaaacctcccaatcccaatcccaagcccgaccaggagcagcttctcacaatccgcgatctcgacaacggcgccgagttcgtcctcaacgaccaccgcctccgcgacgagttcgacctcacgctcggccactcccccatcgtgcaggagctcatgcgccgtcagagcgtccgcggcggagccgccgacgccgccaatgccgcctcttccaaggcaaagaagaacggcgccggcgctggcggcgccggtgccggtgccgcctccggctggctcaggaccatcaagaccgtggcgacctccgtcaccgcctaccgcgaccgccgcagcagcgacgagcgggacacctcgtcggagaagggagggcggcggtccagctcggccacggacgacagccaggacgcggcgttccacggcccggagagggtgcgcgtgaagcagtatgggaagAGTTGCAAGGAGGTGACTGCGCTTTACAAGAGCCAGGAGATTCAGGCGCATAACGGGTCCATTTGGAGCATTAAGTTTAGTTTAGACGGGAAGTACTTGGCGAGTGCCGGTGAGGATTGTGTGATTCACGTGTGGCAGGTGGTGGAGGGGGAGAGGAAGGGGGAGCTGCTGCTGCTGGATAGGGAGAAAGGGGAGGATCATGTTCATGGGAGTAATGTCAATATGCTTTTGCTGGTGAATGGTTCGCCGGAGGCCGCCGCGCTGTTGTCGCCGCTCGCCGATGGGGAGAGGAAGAGGAAGGGGAGGTCCAGTGTGAGTAGGAAGTCGTTGAGCTTGGACCAGTTGGTGGTGCCGCAGACCGTCTTTGCCCTCACTGACAAGCCCGTTTGCTCCTTTCAGGGGCATCTTCATGATGTGCTTGATCTCTCGTGGTCCAAGTCTCAGCACTTGCTCTCATCTTCAATGGACAAAACTGTGCGGCTGTGGCATTTGTCTAGCGAGTCTTGTTTAAAAGTATTTTCACACAGTGACTATGTAACTTGCATCCAGTTTAATCCTGTTGATGATAGATACTTCATTAGCGGGTCGTTGGATGCTAAGGTTCGCATATGGAGCATTCCTGATCGACAAGTTGTTGATTGGACTGATCTGCACGAGATGGTCACTGCTGCATGTTATACGCCTGATGGTCAGGGTGCACTGATTGGTTCATACAAGGGTAGCTGCCATTTATATAATACATCTGAAAATAAGTTGCAACAGAAAAGTCAGATCAATCTGCAGAACAAGAAAAAGAAATCACATCACAAGAAAATTACTGGTTTCCAGTTTGCCCCAGGAAGTTCATCGGAAGTACTTATCACATCTGCTGACTCAAGAATTCGGGTTGTTGATGGTGTTGATCTGGTTCATAAGTTTAAAGGCTTTCGGAATGCAAGTAGCCCGATTTCAGCATCCCTCACGGCAAATGGTAAATACGTTGTCGCAGCAAGTGAGGACTCCCATGTATACATCTGGAAAAACGAAGCTGATTGCAGGCCCAACAGAAGTAAAGGTGTCACTGTCACACGATCGTATGAACATTTTCACTGTAAAGATGTGTCAGTGGCCATTCCGTGGCCTGGTATGGGTGATGCATGGGACATGCATGGTACATTTTCCGGAGAACAACCCGAGCTTGACAACAATGTTGATGAAGTGTTGTCAGCCAATCATCCTCCTACCCCTGTAGAGGAAAACTTTGTTACTGAGGGTTCAAGATCTGCATCAGGTTACAGCAACAGTCCACGCCATGCGACCATTGCAAGTGCCACAAATAGTTACTTTTTTGATAGAATTTCTGCAACATGGCCAGAGGAAAAACTTCTTCTAGCTGCAAGAAACCAAAGCCCTCGTGTGAGTATGGATTTCTCTAATGGGGTAAGTCAAAAAATGTCAGCCTGGGGTATGGTGATTGTAACTGCCGGCCTTCGTGGGGAAATTAGAACTTTCCAAAATTTTGGATTACCACTTCGGATATAA 2289 0.3552 MSKALGDQQQQEDDQDCFYDSHDRLLSLSSSCSCSNSNSDEDNDNNDAYALNNYDIWISHPSSVSERRTRLFLSLGLTRPNPHPHPHPHPHPRDRLSPLRSKSDAANPKPPNPNPKPDQEQLLTIRDLDNGAEFVLNDHRLRDEFDLTLGHSPIVQELMRRQSVRGGAADAANAASSKAKKNGAGAGGAGAGAASGWLRTIKTVATSVTAYRDRRSSDERDTSSEKGGRRSSSATDDSQDAAFHGPERVRVKQYGKSCKEVTALYKSQEIQAHNGSIWSIKFSLDGKYLASAGEDCVIHVWQVVEGERKGELLLLDREKGEDHVHGSNVNMLLLVNGSPEAAALLSPLADGERKRKGRSSVSRKSLSLDQLVVPQTVFALTDKPVCSFQGHLHDVLDLSWSKSQHLLSSSMDKTVRLWHLSSESCLKVFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPDRQVVDWTDLHEMVTAACYTPDGQGALIGSYKGSCHLYNTSENKLQQKSQINLQNKKKKSHHKKITGFQFAPGSSSEVLITSADSRIRVVDGVDLVHKFKGFRNASSPISASLTANGKYVVAASEDSHVYIWKNEADCRPNRSKGVTVTRSYEHFHCKDVSVAIPWPGMGDAWDMHGTFSGEQPELDNNVDEVLSANHPPTPVEENFVTEGSRSASGYSNSPRHATIASATNSYFFDRISATWPEEKLLLAARNQSPRVSMDFSNGVSQKMSAWGMVIVTAGLRGEIRTFQNFGLPLRI 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01073 762 PRINTS G protein beta WD-40 repeat signature 448 462 IPR020472 -
Cca10g01073 762 PRINTS G protein beta WD-40 repeat signature 289 303 IPR020472 -
Cca10g01073 762 PRINTS G protein beta WD-40 repeat signature 406 420 IPR020472 -
Cca10g01073 762 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 270 303 - -
Cca10g01073 762 SUPERFAMILY WD40 repeat-like 265 598 IPR036322 GO:0005515
Cca10g01073 762 PANTHER WD REPEAT DOMAIN 44 127 762 IPR040324 -
Cca10g01073 762 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 127 762 - -
Cca10g01073 762 ProSiteProfiles Trp-Asp (WD) repeats profile. 388 428 IPR001680 GO:0005515
Cca10g01073 762 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 388 422 - -
Cca10g01073 762 SMART WD40_4 422 461 IPR001680 GO:0005515
Cca10g01073 762 SMART WD40_4 509 554 IPR001680 GO:0005515
Cca10g01073 762 SMART WD40_4 263 302 IPR001680 GO:0005515
Cca10g01073 762 SMART WD40_4 464 502 IPR001680 GO:0005515
Cca10g01073 762 SMART WD40_4 555 596 IPR001680 GO:0005515
Cca10g01073 762 SMART WD40_4 381 419 IPR001680 GO:0005515
Cca10g01073 762 ProSiteProfiles Trp-Asp (WD) repeats profile. 270 311 IPR001680 GO:0005515
Cca10g01073 762 Gene3D - 210 358 IPR015943 GO:0005515
Cca10g01073 762 MobiDBLite consensus disorder prediction 76 120 - -
Cca10g01073 762 Pfam WD domain, G-beta repeat 269 301 IPR001680 GO:0005515
Cca10g01073 762 Pfam WD domain, G-beta repeat 383 418 IPR001680 GO:0005515
Cca10g01073 762 Pfam WD domain, G-beta repeat 424 461 IPR001680 GO:0005515
Cca10g01073 762 Pfam WD domain, G-beta repeat 559 596 IPR001680 GO:0005515
Cca10g01073 762 Gene3D - 361 619 IPR015943 GO:0005515
Cca10g01073 762 ProSiteProfiles Trp-Asp (WD) repeats profile. 428 462 IPR001680 GO:0005515
Cca10g01073 762 MobiDBLite consensus disorder prediction 210 247 - -
Cca10g01073 762 MobiDBLite consensus disorder prediction 212 233 - -
Cca10g01073 762 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 428 462 - -
Cca10g01073 762 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 52 79 - -
Cca10g01073 762 PANTHER WD REPEAT DOMAIN 44 52 79 IPR040324 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01073 Cca-Chr10 13461030 13466832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01073 376 593 U-box Gene Family AT1G04510 27.311 2.97e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01073 K20241 - gmx:100806654 1129.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01073 10 13461030 13466832 Cca10g01073 10 13461030 13466832 ECH