Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01068 ATGGATCAGGAGATGGCACCCATAGACATAGAATCTCAAACTCAGGAAACCCCTGACATATTTCACAAAGGAAAACGTCCTGTGGTTCTTAAGTTTGATGATGTTGTCTTTAAAATCAAGCCCAAGAAAGGTGGACCATTTGTGAAGAACGGAGTGGCAGAAGAAAAAGAGATTCTGAAGGGAGTGACTGGTGTTGTTGAGCCTGGTGAGATGCTAGCCATGCTGGGTCCATCTGGGAGTGGCAAAACAACTCTGCTCACAGCATTGGGAGGAAGGCTTGGAGGGAAGCTTGATGGAAACATAACATACAATGGCCAAGCCTTCTCAAATGTAATAAAGAGGAACACTGGCTTTGTTACTCAAGATGATGTTCTCTACCCGCATTTGACTGTGATTGAGACCCTAGTCTTCACTGCGCTTCTCAGATTGCCCAACAGTGTCACCAAAGAAGAGAAAGTTGAGCATGCAAGAGCAGTGATAAATCAACTTGGTTTAAGCAAGTGCAAGGATAGCATTGTTGGCAGTGCTTACTTGAGGGGGGTTTCTGGGGGAGAGAGGAAGAGGGTTAGCATTGGACAAGAACTACTCATAAACCCAAGTTTGTTGTTTCTTGACGAACCTACCTCTGGGCTAGACTCAACCACAGCACAGAGAATTGTCTCAACCTTGTGGGAGCTAGCAAGAGGGGGTAGAACTGTTGTGATGACAATACACCAACCTTCAAGTAGACTATACTACATGTTTCATAAGGTGTTGTTGCTATCAGAAGGAAACACGTTGTATTTTGGAAAGGGATCTGAGGCCATTGAATATTTTTCTAATATTGGATATGCCCCAACATTGGCCATGAACCCCGCAGACTTCCTTTTGGATCTTGCAAACGGTATATACACTGATGAATTGAATGAGGATCATGCCATAGATAAACATAAATTGATTTCGGCATGCAAGAAAAACTTGGCTGCACAATTGAAGCCAGCACTTCAAGGAATCAGTGACTCTGGTAAAAACCAGAAAAGATTTCTGGAAAGAGGCTCTGGAAAATGGCCAACCAGCTGGTGTCAGCAATTCTCAGTGCTGCTAAGAAGGGACATCAAAGAGAGAAGGCATGAATCATTATCTGTTTTGCGGATTGGTCAGGTCCTTGTGGTTTCACTTATTTCAGGACTACTGTGGTATAAGTCTGATATTTCACACTTGCAAGATCAGATTGGGCTTCTATTCTTCATGTCTGGCTTCTGGGGTTTCTTCCCTCTCTTCCAAGCAATTTTCACATTTCCCCAAGAGCTACTGATGCTAGAGAAAGAAAGATCTTCTGGAACGTACAGGCTTTCCTCATACTTCATGTCAAGGATGGTAGCTGACCTTCCCATGGAACTTGTTCTTCCCACCATATTTCTTTTCATATGCTATTGGATGGCAGGGTTGAGAGCTAATGCACTCAGCTTCTTGTACACATTGCTCACCCTCTTGTTCAATGTGTTGGTCTCACAAGGCCTAGGCCTTGCCCTTGGTGCTTCTGTCATGGATCAAAAAGCTGCAACCACACTTGCCTCAGTCATCATGCTATGCTTCTTGCTGGCTGGGGGATTCTATGTTCAGCATGTTCCAAAATTTATTGCATGGGTCAAGTACATTTCCATCAGCTTCTACACCTACCAGCTCTTTATTGGCTCGCAGTATCACCACGGTGAGACATACCCTTGTTCTGTGGGTCAGTGCCAAATTGCAGATTTTCCTTCTATAAAGGGAATGGGAATTCATTTTAGTTTGCATGAGCAAATCATGGCTGCATCAGCTTTAATGATAATGCTAATAGGTTATAGACTTATAGCTTATCTTGCTCTCATGAGGATTGGGGTGATAAAGAACTAG 1875 0.4352 MDQEMAPIDIESQTQETPDIFHKGKRPVVLKFDDVVFKIKPKKGGPFVKNGVAEEKEILKGVTGVVEPGEMLAMLGPSGSGKTTLLTALGGRLGGKLDGNITYNGQAFSNVIKRNTGFVTQDDVLYPHLTVIETLVFTALLRLPNSVTKEEKVEHARAVINQLGLSKCKDSIVGSAYLRGVSGGERKRVSIGQELLINPSLLFLDEPTSGLDSTTAQRIVSTLWELARGGRTVVMTIHQPSSRLYYMFHKVLLLSEGNTLYFGKGSEAIEYFSNIGYAPTLAMNPADFLLDLANGIYTDELNEDHAIDKHKLISACKKNLAAQLKPALQGISDSGKNQKRFLERGSGKWPTSWCQQFSVLLRRDIKERRHESLSVLRIGQVLVVSLISGLLWYKSDISHLQDQIGLLFFMSGFWGFFPLFQAIFTFPQELLMLEKERSSGTYRLSSYFMSRMVADLPMELVLPTIFLFICYWMAGLRANALSFLYTLLTLLFNVLVSQGLGLALGASVMDQKAATTLASVIMLCFLLAGGFYVQHVPKFIAWVKYISISFYTYQLFIGSQYHHGETYPCSVGQCQIADFPSIKGMGIHFSLHEQIMAASALMIMLIGYRLIAYLALMRIGVIKN 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01068 624 Pfam ABC-2 type transporter 355 561 IPR013525 GO:0016020|GO:0140359
Cca10g01068 624 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 274 IPR027417 -
Cca10g01068 624 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 11 620 - -
Cca10g01068 624 ProSitePatterns ABC transporters family signature. 181 195 IPR017871 GO:0005524
Cca10g01068 624 PANTHER ABC TRANSPORTER G FAMILY MEMBER 21 11 620 - -
Cca10g01068 624 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 30 281 IPR003439 GO:0005524
Cca10g01068 624 Pfam ABC transporter 59 209 IPR003439 GO:0005524
Cca10g01068 624 SMART AAA_5 68 258 IPR003593 -
Cca10g01068 624 Pfam ABC-2 type transporter 238 305 IPR043926 GO:0140359
Cca10g01068 624 Gene3D - 45 275 IPR027417 -
Cca10g01068 624 CDD ABCG_EPDR 27 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01068 Cca-Chr10 13305322 13309158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01068 57 295 Calmodulin-binding Proteins AT2G36910 27.530 2.14e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01068 K05681 - gmx:100816135 999.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01068 10 13305322 13309158 Cca10g01068 10 13305322 13309158 ECH