Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01067 ATGGGAGTTCCAGAGAGAGACCCTCTTTCTCAACTGAGTTTGCCTCCTGGTTTCCGCTTTTACCCCACCGACGAGGAGCTTCTCGTTCAGTATCTGTGCCGCAAGGTTGCTGGTCACCATTTCTCTCTCCAAATCATTGCTGAAATTGACTTGTACAAGTTCGACCCCTGGGTTCTTCCAAGCAAGGCGATTTTCGGTGAAAAAGAATGGTACTTTTTCAGCCCTAGAGACAGAAAATACCCAAACGGGTCCCGACCCAACAGAGTAGCCGGGTCCGGGTACTGGAAAGCCACCGGAACCGACAAAATCATCACCACCGAAGGTAGAAAAGTTGGCATAAAAAAAGCTCTTGTTTTCTACGTTGGCAAAGCCCCCAAAGGCACCAAAACCAATTGGATCATGCACGAGTATCGCCTTCTCGACTCTTCCCGAAAAAACAACGGTGGCACCAAGCTTGATGATTGGGTTTTGTGTCGTATATACAAGAAGAATTCAAGCGCGCAGAAGGCAGCTCAAAACGGCGTGGTTTCGAGCAACGAGCACACTCAATACAGCAACGGGTCGTCCTCTTCGTCCTCGTCCCACCTCGACGAGGTTCTGGAATCGTTGCCAGAGATCGACGAGAGTTGTTTCATGGTGCCACGTGTGAACGCGATGCCGCAACATCGGGAGGAGAAGCTGAACCTCGGCGCGGGGGGTTTGATGGATTGGGCCAACCCTGTGCTGAGCTCGGTGGGTGATTTCGTTTCGGGGAACCCAATGGTGCAGGCCCAAACTCAGGGGATGGTGAATTATTCTGGGCCTGGGTGTAATGACCTTTATGTCCCCACGCTCTGCCACGTGGACTCGTCGCTGCCGCAGAAGGTGGAGGAGGAGGTGCAAAGCGGTGTGAGGAACCAACGGCTGGAGAATTCGTGGTTTCTTCAGAATGATTTCGCGCAGGGGTTCACGAACTCCGTGGACACGTGTGGGTTTAAGTACCCGGTTCAGCCCGTGGGCTTCGGCTTCAGGCAATGA 1017 0.529 MGVPERDPLSQLSLPPGFRFYPTDEELLVQYLCRKVAGHHFSLQIIAEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITTEGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRLLDSSRKNNGGTKLDDWVLCRIYKKNSSAQKAAQNGVVSSNEHTQYSNGSSSSSSSHLDEVLESLPEIDESCFMVPRVNAMPQHREEKLNLGAGGLMDWANPVLSSVGDFVSGNPMVQAQTQGMVNYSGPGCNDLYVPTLCHVDSSLPQKVEEEVQSGVRNQRLENSWFLQNDFAQGFTNSVDTCGFKYPVQPVGFGFRQ 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01067 338 PANTHER NAC TRANSCRIPTION FACTOR 56 1 317 - -
Cca10g01067 338 SUPERFAMILY NAC domain 10 164 IPR036093 GO:0003677|GO:0006355
Cca10g01067 338 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Cca10g01067 338 MobiDBLite consensus disorder prediction 169 198 - -
Cca10g01067 338 ProSiteProfiles NAC domain profile. 14 163 IPR003441 GO:0003677|GO:0006355
Cca10g01067 338 Gene3D NAC domain 23 169 IPR036093 GO:0003677|GO:0006355
Cca10g01067 338 PANTHER NAC DOMAIN-CONTAINING PROTEIN 55 1 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01067 Cca-Chr10 13263034 13264270 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01067 1 241 NAC Transcription Factor Family AT3G15500 70.916 1.69e-119 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca10g01067 NAM 6.4e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01067 - - gmx:100170718 591.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01067 10 13263034 13264270 Cca10g01067 10 13263034 13264270 ECH