Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01066 ATGGAGAGCACCGACTCATCCACAGGTTCGCAACAACCCAACCTGCCACCGGGGTTCCGCTTCCACCCCACCGACGAGGAGCTCGTCGTTCACTACCTCAAGAAAAAAGCAGCTTCTGCTCCTCTTCCGGTAGCCATAATCGCCGAGGTTGATCTCTACAAGTTCGATCCGTGGGAGCTACCCGCTAAGGCCACGTTTGGGGAGCAGGAGTGGTACTTCTTTAGTCCTCGGGACAGGAAGTATCCGAACGGGGCGAGGCCAAACAGGGCGGCCACATCTGGGTATTGGAAAGCGACGGGGACTGATAAGCCTGTGTTGACCTCTGGAGGAACCCAAAAGGTTGGGGTGAAGAAGGCTTTGGTTTTCTATGGAGGGAAGCCCCCAAGAGGTATCAAAACCAATTGGATCATGCATGAGTATAGGCTTGCTGATAACAAGCCTAACAATAGGCCTCCTGGCTGTGACTTGGGCAACAAGAAAAACTCTCTCAGGCTTGATGATTGGGTGCTGTGCCGAATCTACAAGAAGAGCAACACGCATAGGTCTCCTATGGAGCATGAGAGGGAAGATTCAATGGAAGACATGATTGGAGGGGTTCCTCCTTCGATGAACCTGAGCCACATGAATGCGAGGTTTCATCTTTCGAAGATGTCCACCACAGGCTACAACAGTGCATTGTTGGAAAATGACCAGAACTTGTTGGAAGGGATGATGATGAACACAAGCACAACCACACCTGGTGCCATGTCATCTCAGTTGGGGGGCTCAAACTCCAAGCCAGAGCTCTCTTTTGTGCCAACCATGACTCACTCTTCAAACACTTCCAAAAGGACACTCTCGTCGCTGTATTGGAACGATGAGGACGTGGCTGGCACGTCCTCATCGAACAAAAGGTTCAATTTGGAAAGTGGAGATAACAATCATGGAAGTGTTGTGAGGACTGATCAAGAGAATGGCACTGCTAACTCTATTGCCACTCTGCTCAACCAGCTCCCTCAAACCCCTTCATTGCACCAACAATCAATGTTGGGATCATTAGGAGATGGATTACTAAGGACAACATATCAAATACCAGGAATGAATTGGTATGCTTAG 1095 0.4977 MESTDSSTGSQQPNLPPGFRFHPTDEELVVHYLKKKAASAPLPVAIIAEVDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLTSGGTQKVGVKKALVFYGGKPPRGIKTNWIMHEYRLADNKPNNRPPGCDLGNKKNSLRLDDWVLCRIYKKSNTHRSPMEHEREDSMEDMIGGVPPSMNLSHMNARFHLSKMSTTGYNSALLENDQNLLEGMMMNTSTTTPGAMSSQLGGSNSKPELSFVPTMTHSSNTSKRTLSSLYWNDEDVAGTSSSNKRFNLESGDNNHGSVVRTDQENGTANSIATLLNQLPQTPSLHQQSMLGSLGDGLLRTTYQIPGMNWYA 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01066 364 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 340 - -
Cca10g01066 364 SUPERFAMILY NAC domain 7 176 IPR036093 GO:0003677|GO:0006355
Cca10g01066 364 MobiDBLite consensus disorder prediction 1 20 - -
Cca10g01066 364 PANTHER NAC TRANSCRIPTION FACTOR 56 1 340 - -
Cca10g01066 364 ProSiteProfiles NAC domain profile. 15 176 IPR003441 GO:0003677|GO:0006355
Cca10g01066 364 MobiDBLite consensus disorder prediction 1 17 - -
Cca10g01066 364 MobiDBLite consensus disorder prediction 291 314 - -
Cca10g01066 364 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
Cca10g01066 364 Gene3D NAC domain 24 181 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01066 Cca-Chr10 13182344 13184655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01066 1 364 NAC Transcription Factor Family AT3G15510 54.124 2.24e-127 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca10g01066 NAM 1.1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01066 - - vra:106763825 672.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01066 10 13182344 13184655 Cca10g01066 10 13182344 13184655 ECH