Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01054 ATGAACGGGAAGGCCAACGTCACCAAGGAGCTCAACGCCAAGCACAAGAAGATATTGGAAGGACTTCTTAAATTACCAGATAACAGGGAATGTGCTGACTGCAAAGCTAAAGGTCCAAGATGGGCTAGTGTAAATCTTGGCATCTTTATATGCATGCAGTGTTCTGGAATACATCGAAGTTTGGGGGTACATATATCAAAGGTCCGTTCTGCAACCCTGGACACTTGGCTTCCAGAGCAAGTTGCATTCATTCAATCAATGGGAAACGAGAAAGCAAATAGTTTTTGGGAAGCAGAATTACCTCCAAATTATGATAGAGTTGGAATTGAGAACTTCATTCGTGCAAAGTATGAAGAGAAGAGATGGGTTCCAAGAGATGGGAATTCAAAAACACCTTCTGGATTGCGGGAAGAGAAAACTCCACATTGGCAGAGGCCTGTGGAGAGAAGTGGTCATGCTGCTGTTTCTGAGAATACTTTTGAGGAAAGGAAGAGAACCCAACCATCAAATGCAATTCCTGCTACAAGAATTAGTGTTCCTGCTCCTCCCAGAGCACCTGAGCAGGTAACTCCAACTCCTGTTACCAAACCTCAGCATGTTGAGAAAGTGGAACCAGTAGCACCGCAACCACAAGCTGAAACTTCTAAGCAGGCAACAGACACAGCTCAAACTACCCCTCCAAAAGTTGACTATGCTACAGACCTTTTCAACATGTTGTCTATGGATGGCCCCAGTGAAAATGCCTCAGAAGCTGCTGGTGCAACCGTTGATGATAATCACTGGGCAGGTTTTCAGTCTGCTGCAGAGGTGTCAACAGCTGAGAAGACTAGTCTGCCGAAAGCAGCTGATAGTACTCCCCAGTCTGCATCTGGCATTGAGGATCTCTTCAAAGATTCACCTTCTATGACACCATGCTTAGCTCCAGAAAAACCACAGAAAGATGTGAAAAATGATATCATGAGCCTCTTTGAGAAGGGCAATGTGGTATCTCCATTTTCTATGCATCAACAGCAGCTTGCCATGCTAGCACAGCATCAGTCTCTTCTAATGGCTGCTGCAGCTAAATCTACTGGTGCAGATCCCAGGTATCCTACTGGCATACAACAACTTAGACCCGGTGTTCCTATTCAAAGTTGGCCAGCTAATGGCTACTCGATTCCTGGTGTAATGCCCATGGGTGGTCAGGGAGAGCTGCAAAAACTTATGCAGGGTCAGAGTAGGAACATGATCCCAGCACAATTTGCTGGGAGCTCTGTTCAATATCCACCATCCAGTTTCTATGCTATGGGACAAGTTCCTCCAGTTAACGGTATGGGACAAGTTCATCAAGTTAACGGGTTGATAGCGACAATGGGAGCGAGTAAACCTCAGTCGGCAGCTCCAGTGTCATCTACCACTTCACAGCCTGCGAAGGATTATGATTTTTCCTCCTTAACACAAGGGATGTTTGGGAAACACTGA 1461 0.4579 MNGKANVTKELNAKHKKILEGLLKLPDNRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSFWEAELPPNYDRVGIENFIRAKYEEKRWVPRDGNSKTPSGLREEKTPHWQRPVERSGHAAVSENTFEERKRTQPSNAIPATRISVPAPPRAPEQVTPTPVTKPQHVEKVEPVAPQPQAETSKQATDTAQTTPPKVDYATDLFNMLSMDGPSENASEAAGATVDDNHWAGFQSAAEVSTAEKTSLPKAADSTPQSASGIEDLFKDSPSMTPCLAPEKPQKDVKNDIMSLFEKGNVVSPFSMHQQQLAMLAQHQSLLMAAAAKSTGADPRYPTGIQQLRPGVPIQSWPANGYSIPGVMPMGGQGELQKLMQGQSRNMIPAQFAGSSVQYPPSSFYAMGQVPPVNGMGQVHQVNGLIATMGASKPQSAAPVSSTTSQPAKDYDFSSLTQGMFGKH 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01054 486 PANTHER ARF GTPASE ACTIVATOR 1 485 - -
Cca10g01054 486 CDD ArfGap 19 117 - -
Cca10g01054 486 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Cca10g01054 486 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
Cca10g01054 486 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Cca10g01054 486 MobiDBLite consensus disorder prediction 456 486 - -
Cca10g01054 486 Gene3D Arf GTPase activating protein 2 130 IPR038508 -
Cca10g01054 486 MobiDBLite consensus disorder prediction 124 227 - -
Cca10g01054 486 MobiDBLite consensus disorder prediction 124 146 - -
Cca10g01054 486 MobiDBLite consensus disorder prediction 268 292 - -
Cca10g01054 486 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Cca10g01054 486 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Cca10g01054 486 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Cca10g01054 486 MobiDBLite consensus disorder prediction 456 475 - -
Cca10g01054 486 Pfam Putative GTPase activating protein for Arf 17 123 IPR001164 GO:0005096
Cca10g01054 486 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 485 IPR044520 GO:0005096
Cca10g01054 486 MobiDBLite consensus disorder prediction 210 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01054 Cca-Chr10 13007503 13013089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01054 16 123 C2H2 Transcription Factor Family AT4G05330 50.000 1.47e-30 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01054 K12486 - gmx:100789910 801.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01054 10 13007503 13013089 Cca10g01054 10 13007503 13013089 ECH