Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01052 ATGGCTTCGTGCACCACATATTATGAGATTCTAGGAATATGTGCCTCTGCGTCCAATGACGGAATCAAGGCAGCGTACCGACGACTGGCGAGGGCTTGCCACCCTGACATGGTGCCAGTAGACCGGAAAGCAACCTCTTCAAGAGAGTTCATGAAGATCAATGTTGCGTATTGCACCTTATCAGATCCCGAGAAGCGTGCTAGTTATGATAAAGGCTTGTTCCTACGTCAACGATCTCTCAAAACAATGTCCAAAATTTCTAGCTATACTGGTCGAAATTGGGAGACAGACCAATGTTGGTAG 303 0.4686 MASCTTYYEILGICASASNDGIKAAYRRLARACHPDMVPVDRKATSSREFMKINVAYCTLSDPEKRASYDKGLFLRQRSLKTMSKISSYTGRNWETDQCW 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01052 100 PANTHER DNAJ PROTEIN HOMOLOG-LIKE 1 100 - -
Cca10g01052 100 Gene3D DnaJ domain 1 93 IPR036869 -
Cca10g01052 100 SUPERFAMILY Chaperone J-domain 2 76 IPR036869 -
Cca10g01052 100 SMART dnaj_3 5 65 IPR001623 -
Cca10g01052 100 CDD DnaJ 6 62 IPR001623 -
Cca10g01052 100 Pfam DnaJ domain 6 70 IPR001623 -
Cca10g01052 100 PRINTS DnaJ domain signature 8 26 IPR001623 -
Cca10g01052 100 PRINTS DnaJ domain signature 26 41 IPR001623 -
Cca10g01052 100 PRINTS DnaJ domain signature 45 65 IPR001623 -
Cca10g01052 100 ProSiteProfiles dnaJ domain profile. 6 73 IPR001623 -
Cca10g01052 100 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 1 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01052 Cca-Chr10 12959600 12959989 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01052 7 70 C2H2 Transcription Factor Family AT1G74250 41.791 3.10e-10 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01052 - - aip:107642575 141.739