Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01050 ATGTTATCATCAGCTTCGATGTCTTCTCTAACGAGGAGTTCGTTGGAAGAGATGCTTGAATCGCTTCGCCGGAGAGACGAGGAGGAGAAGCCGAAGGACAAGCCGCCGGCATTGCCGTCGCGGCCTCCGTCGAGGGCGCGGTTGCCGTCGGCGAGGAGGTTGCCTAATAGCTTCAAGGTTGATGGTGAGATGGGGCACAGGAGGAAGAGTAGTTTTGGGCACAAGAAGATAAAGATGGATGTTGAATCTCCTTATGTAGTTATATCAGAAGAGAAAGTGAGTGAACAAGTATCGCCTTGTCCAGTTTCAACATCCAATGAGTCTTCTTCAGATTGTGAAGCTCCTCCTTCATCAGGGGAGTTTGAGGATGACAATGTTGGTTATTTCATGAAAAAGAAACTTCATGTTTGGTGTAGGCAACCAAAAGGGAAGTGGGAGCTAGGAACGATACAGTCAACTTCAGGAGAGGAAGCATCTGTTTCACTCTCAAACGGAAATGTTATGAAAGTAGCTAGATCAGATATCCTACCAGCTAATCCTGATATTTTAGAGGCTGTCGAAGATCTTATACAGCTCAGTTATTTAAATGAGCCCTCAGTTCTTCACAATCTTCAGTCTAGATATTCTCAGGATATGATTTATAGTAAAGCAGGGCCTATTTTAATTGCACTCAACCCTTTCAAAGATGTCCAGATTTATGGAAATGATTATATCTCAGCTTATAGGCAGAAACTTATGGATAGTCCTCACGTTTATGCTATGGCAGATGCAGCTTATAATGAGATGATGGAAGATGAAGTGAACCAGTCTATCATCATCAGCGGTGAGAGTGGATCTGGAAAAACAGAGACAGCAAAAATTGCTATGCAATACTTAGCTGCTCTTGGTGGTGGTTGTTCTGGAATAGAAAATGAAATTCTTCAGACAAATTTTATACTAGAAGCTTTTGGGAATGCAAAAACATCTAGGAATGACAACTCTAGCAGATTTGGGAAGTTGATTGAAATTCATTTCAGTGCAATGGGGAAAATTTGTGGGGCAAAAATTCAAACTTGTAAGACTTCAAGAGTTGTTCAACTTGCTTTGGGCGAGAGGTCATATCACATATTTTATCAACTTTGTGCTGGATCTTCGTCTGAGCTCAAAGAAAGACTGAATCTTAGGATGGCTAGTGAATATAAATATCTTAACCAGAGTGAATACTTGACAATTGATGGTGTTGATGATGCTAAAAAGTTTCATGGGCTGATGGAAGCATTGGATGTTATTAGAATGTGCAAAGAGGATCAAGAATTGGTTTTTAAGATGCTGGCTGCGATTTTATGGCTGGGAAACATATCATTCCAAGTTAATGACAATGAAAATCACATTGAAGTGGTGAATGAtgaagCTGTAACCAATGCTGCTTTGCTAATGGGCTGTAGTTCCCAAGAGCTAATGGAAGCATTATCTACCCATAAAATCCAAGCTGGCAAGGATACTATTACCAAGACATTGACCTTGCGACAGGCAATCGATGCAAGAGATGCATTAGCAAAATTTATCTATGCAAGCTTGTTTGATTGGCTTGTAGACCAAGTTAATAAGTCACTTGAAGTGGGTAAACGACGCACTGGGAGGTCCATAAGTATCCTCGATATTTATGGGTTTGAGTCATTTCAGAATAACAGCTTTGAGCAATTTTGTATAAACTATGCCAATGAGAGGCTTCAACAACATTTCAATCGGCATCTATTTAAACTTGAGCAGGAGGACTACGAGCTAGATGGCATTGATTGGACTAAAGTAGAATTTGAGGACAATCAAGGATGTTTGGATCTCTTCGAGAAGAAGCCTCTGGGGCTATTCTCTCTGTTGGACGAGGAATCAAATTTCCCCAGGGCCACTGGTCTAACACTTGCGAACAAACTTAAGCAGCACCTGCACACTAATCCTTGCTTCAAAGGGGAAAGAGGCAGGGCTTTTAGTGTCTGTCATTATGCAGGAGAGGTTTTGTATGAAACAACTTGCTTCCTAGAAAAGAACAGAGATCCACTACCGTCGGGTTCCATTCAACTACTGTCATCTTGTAGTTGTGAACTGTTACAGTTGTTCTCCAAGACACTTAATCAGTCTACGAAGCAATCAAATTCCTTGTATGGAGGTGCTCTGGACTCACAAAAGCAGAGTGTTGGCACAAAGTTCAAGGGTCAATTGTTCAAGTTGATGCATCAGTTGGAGAGTACCACACCTCACTTTATTCGCTGTATAAAGCCTAATACTAAGCATCTTTCTAGAATATATGATGAAGATCTTGTGCTACAACAGCTCAAGTCCTGTGGAGTTTTGGAGGTTGTTAGGATTTCAAGGGCTGGATATCCAACTAGAATGACACATCAAGAGTTTTCCAGAAGGTATGGGTTTCTGCTTTCTGAGGCAAACGCATCTCAGGATCCATTGAGCATCTCAGTTGCTGTTTTACAACAGTTTAATATCCCTCCCGAAATGTACCAAGTTGGCTTCACCAAACTCTATCTTCGAACAGGGCAGATTGGGGCACTGGAGGATAAGAGAAAACATCTTTTGCAGGGAATACTTGGGATTCAAAAAAGCTTTCGTGGTTATCAAGCTCGCCATCATTACCATGAACTTAAGAAAGGAGTGGCTACTTTACAATCATTTTTTCGTGGAGAAAATGCAAGAAGGCAATATGGTGTTATGGTGAAGTCTTCTATAACTATTTCTTCTGAAAATATTAAGGAGACACAGGCAGCCACAATTCTACAATCTGTAATTCGTGGGTGGCTGGTTCGGAGGCATGCTAGTGGCAAAAATAAGTCAAAGAAATATCCTGAAAATGCTAAATCTAAGCAAAGGACACGCGTGAGGTTGCCTGAAGAAAAGGATGTGTCTAGTGAGCGAGTCCAGAATCTGCCTTCAGCTTTAGCAGAACTGCAAAAGCGGGTTGTCAAGGCCGAAGCCACCATAGAGCAAAAGGAAGAGGAAAATGCTGAATTGAAGGAACAACTAAAACAATTTGAGAAAAGGTGGATTGAATATGAGAAAAAGATGAAATCAATGGAGGAGATGTGGCAAAAACAAATGGCATCTTTGCAAATGAGCCTTGCTGCTGCTAGAAAGAGCCTTTCTGCTGAGAATGCTGGCGGTCAACTTGCAAGACGCGAAGTTGCATCTTTCAGCTATGAATCAGAAGATGCTACTACCATGGGAACTCGAACTCCTCGAACGCCGGGTGCAAGCACGCCGTTGAAGTATTCGAGTAGTCTTTCCGAAGCTAATGGCTCTTTGACTTCAGTCAGCAACCTGATGAGGGAATTTGACCAGCGCAGACAGACATTTGATAATGATGCCAGGGCTCTGGTTGAGGTTAAAACTGGTCAATCTGCTAACACAAATTCCATCGAAGAACTTCGGAAACTCAAACATAGGTTTGAGGGGTGGAAGAGTGACTACAAGGTTAGACTAAAAGAGACAAAAACAAGACTTCATAAAGTAGGGAATTCAGAATTGGATAAAAGGAAGAGATGGTGGGGGAAATTGAGTTCTAGAGCACTATAG 3558 0.4165 MLSSASMSSLTRSSLEEMLESLRRRDEEEKPKDKPPALPSRPPSRARLPSARRLPNSFKVDGEMGHRRKSSFGHKKIKMDVESPYVVISEEKVSEQVSPCPVSTSNESSSDCEAPPSSGEFEDDNVGYFMKKKLHVWCRQPKGKWELGTIQSTSGEEASVSLSNGNVMKVARSDILPANPDILEAVEDLIQLSYLNEPSVLHNLQSRYSQDMIYSKAGPILIALNPFKDVQIYGNDYISAYRQKLMDSPHVYAMADAAYNEMMEDEVNQSIIISGESGSGKTETAKIAMQYLAALGGGCSGIENEILQTNFILEAFGNAKTSRNDNSSRFGKLIEIHFSAMGKICGAKIQTCKTSRVVQLALGERSYHIFYQLCAGSSSELKERLNLRMASEYKYLNQSEYLTIDGVDDAKKFHGLMEALDVIRMCKEDQELVFKMLAAILWLGNISFQVNDNENHIEVVNDEAVTNAALLMGCSSQELMEALSTHKIQAGKDTITKTLTLRQAIDARDALAKFIYASLFDWLVDQVNKSLEVGKRRTGRSISILDIYGFESFQNNSFEQFCINYANERLQQHFNRHLFKLEQEDYELDGIDWTKVEFEDNQGCLDLFEKKPLGLFSLLDEESNFPRATGLTLANKLKQHLHTNPCFKGERGRAFSVCHYAGEVLYETTCFLEKNRDPLPSGSIQLLSSCSCELLQLFSKTLNQSTKQSNSLYGGALDSQKQSVGTKFKGQLFKLMHQLESTTPHFIRCIKPNTKHLSRIYDEDLVLQQLKSCGVLEVVRISRAGYPTRMTHQEFSRRYGFLLSEANASQDPLSISVAVLQQFNIPPEMYQVGFTKLYLRTGQIGALEDKRKHLLQGILGIQKSFRGYQARHHYHELKKGVATLQSFFRGENARRQYGVMVKSSITISSENIKETQAATILQSVIRGWLVRRHASGKNKSKKYPENAKSKQRTRVRLPEEKDVSSERVQNLPSALAELQKRVVKAEATIEQKEEENAELKEQLKQFEKRWIEYEKKMKSMEEMWQKQMASLQMSLAAARKSLSAENAGGQLARREVASFSYESEDATTMGTRTPRTPGASTPLKYSSSLSEANGSLTSVSNLMREFDQRRQTFDNDARALVEVKTGQSANTNSIEELRKLKHRFEGWKSDYKVRLKETKTRLHKVGNSELDKRKRWWGKLSSRAL 1185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01050 1185 Coils Coil 975 1023 - -
Cca10g01050 1185 SMART MYSc_2a 178 853 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca10g01050 1185 ProSiteProfiles IQ motif profile. 914 942 IPR000048 GO:0005515
Cca10g01050 1185 MobiDBLite consensus disorder prediction 97 119 - -
Cca10g01050 1185 PANTHER MYOSIN-2 ISOFORM X1 116 1183 - -
Cca10g01050 1185 Gene3D - 858 903 - -
Cca10g01050 1185 ProSiteProfiles IQ motif profile. 854 883 IPR000048 GO:0005515
Cca10g01050 1185 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 903 IPR027417 -
Cca10g01050 1185 MobiDBLite consensus disorder prediction 935 968 - -
Cca10g01050 1185 Gene3D - 786 853 - -
Cca10g01050 1185 PRINTS Myosin heavy chain signature 541 569 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca10g01050 1185 PRINTS Myosin heavy chain signature 268 293 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca10g01050 1185 PRINTS Myosin heavy chain signature 214 233 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca10g01050 1185 PRINTS Myosin heavy chain signature 311 338 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca10g01050 1185 PRINTS Myosin heavy chain signature 594 622 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca10g01050 1185 Gene3D Myosin VI head, motor domain, U50 subdomain 422 530 - -
Cca10g01050 1185 PANTHER MYOSIN 116 1183 - -
Cca10g01050 1185 Pfam Myosin head (motor domain) 186 840 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca10g01050 1185 Gene3D - 365 421 - -
Cca10g01050 1185 SMART iq_5 876 898 IPR000048 GO:0005515
Cca10g01050 1185 SMART iq_5 913 935 IPR000048 GO:0005515
Cca10g01050 1185 SMART iq_5 853 875 IPR000048 GO:0005515
Cca10g01050 1185 MobiDBLite consensus disorder prediction 17 36 - -
Cca10g01050 1185 MobiDBLite consensus disorder prediction 939 966 - -
Cca10g01050 1185 Pfam IQ calmodulin-binding motif 915 933 IPR000048 GO:0005515
Cca10g01050 1185 Pfam IQ calmodulin-binding motif 858 875 IPR000048 GO:0005515
Cca10g01050 1185 Pfam IQ calmodulin-binding motif 880 897 IPR000048 GO:0005515
Cca10g01050 1185 MobiDBLite consensus disorder prediction 1 74 - -
Cca10g01050 1185 MobiDBLite consensus disorder prediction 1 16 - -
Cca10g01050 1185 CDD MYSc_Myo8 198 840 IPR036022 -
Cca10g01050 1185 ProSiteProfiles Myosin motor domain profile. 184 852 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca10g01050 1185 MobiDBLite consensus disorder prediction 97 115 - -
Cca10g01050 1185 MobiDBLite consensus disorder prediction 1062 1085 - -
Cca10g01050 1185 Gene3D - 553 742 - -
Cca10g01050 1185 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 131 180 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cca10g01050 1185 Gene3D Kinesin motor domain 183 785 IPR036961 -
Cca10g01050 1185 ProSiteProfiles IQ motif profile. 877 906 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01050 Cca-Chr10 12875045 12884800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01050 1 1179 Myosins gene family AT5G54280 61.982 0.0 1522
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01050 K10357 - gmx:100819335 1962.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01050 10 12875045 12884800 Cca10g01050 10 12875045 12884800 ECH