Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01049 ATGGCAGGAACATTGATGGCAGCTACAACAAGCTCTGGCACTGTTCTTAAGCCAACCCCTTTCCTTGGCCAAGGCAAGGGTGCCAATGCCAACCCTCTTAGGGATGTTGTCTCCATGGGAACTGGGAAATACACCATGGGGAATGAATTGTGGTATGGACCAGACAGAGTGAAGTACTTGGGACCCTTTTCAGCTCAGACCCCTTCATACTTGAAAGGAGAATTTCCAGGGGATTATGGATGGGACACTGCTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGGTGATCCATGGGCGTTGGGCCATGCTTGGAGCACTAGGATGCATCACCCCAGAAGTCCTTGAGAAGTGGGTGAGAGTGGACTTCAAGGAGCCAGTGTGGTTCAAAGCTGGAGCCCAAATATTCTCAGAAGGTGGGCTTGACTACTTGGGGAACCCAAACCTTGTCCATGCACAAAGCATCCTGGCGGTGCTGGGCTTCCAAGTTGTTCTGATGGGCCTTGTTGAAGGGTTCCGCATCAATGGGCTTGATGGAGTGGGAGAGGGCAACAACCTCTACCCTGGGGGCCAGTACTTTGACCCACTGGGCCTTGCTGATGACCCTGCCACTTTTGCTGAGCTAAAAGTCAAGGAGATCAAGAATGGAAGGTTGGCCATGTTCTCTATGTTTGGTTTCTTTGTTCAGGCCATTGTCACCGGAAAAGGCCCATTGGAGAATCTTTTGGACCACCTTGACAACCCTGTGGCCAACAATGCTTGGGTCTATGCCACTAAGTTTGTGCCCGGTTCTTAA 810 0.5123 MAGTLMAATTSSGTVLKPTPFLGQGKGANANPLRDVVSMGTGKYTMGNELWYGPDRVKYLGPFSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPGS 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01049 269 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 7 269 IPR001344 GO:0009765|GO:0016020
Cca10g01049 269 Pfam Chlorophyll A-B binding protein 68 235 IPR022796 -
Cca10g01049 269 SUPERFAMILY Chlorophyll a-b binding protein 50 266 - -
Cca10g01049 269 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 7 269 - -
Cca10g01049 269 Gene3D Chlorophyll a/b binding protein domain 58 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01049 Cca-Chr10 12871606 12873244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01049 1 268 Chloroplast and Mitochondria Gene Families AT2G05070 66.426 2.43e-120 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01049 K08914 - gmx:100779387 532.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01049 10 12871606 12873244 Cca10g01049 10 12871606 12873244 ECH