Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01047 ATGTCTCTCTCTTACGCCCGATGCTTCTCACTCAGTCACTCTCCTCTCCTCTCCTCCATGGCCACCAATCACACTTTACCTGACCACCACGACTCACGTGTTTCACGCATGCACTACTACTACTCCTCcgacgacaacgacagcgacctcgacctcgacctcgacgactacaacaacaaTGTGAGCGGCAGCGCCTTCGAGGAGGAGCCGAAGAAggcggagagcggcggcctgcggcgaaaggtggcggcggcggtggcggtggAACCGAGAGGGAAGTGGGTCCAAGAATGGAACAGGGTGTTCCTGCTGGTGTGCGCGACGGGGTTGTTCGTGGACCCGCTCTTCTTCTACGCGCTCTCCATAAGTGACACGTGTATGTGCCTCTTCGTCGACGCCTGGCTCCTCATCACCGTCACCGTCCTCCGCTGCATGACCGACGCTTTGCATTTCTGGAACATCTGGCTCCACTTCAACATCGCTAGACGCTCTTTTTTTCTCTCCGCAGACACCACCACGCCACGTTACTTTGCTCTTCACTACCTCACCGCTAAAAGGACCTTCTTCTTTGACCTCTTTGTTATCCTCCCTATTCCCCAGATTGTGTTATGGGTGGCAATTCCCTCTCTGTTGGAGAAAGGATCAATTACGTTGGTGATGACAGTGTTCATAATTATGTTTCTCTTTCAATACCTTCCCAAAATTTATCACTCCGTTTGCCTCTTGCGTCGCATGCAAAACCTCTCTGGCTACGTTTTTGGAACCGTTTGGTGGGGTATCGCCCTCAACCTCATCGCCTATTTTGTAGCTTCCCATGCAGCAGGTGCATGTTGGTACTTGCTGGGGTTGCAAAGGGCAGCAAAATGCCTAGAAGAGCAGTGTGCTAAAGCAAGTGGTTGTGGCTTGAGAACACTGTGTTGTAAAGAGCCTATATACTATGGAGGCACCAACTTTGTAACAGACAAAACCAGGTTGGCATGGGCGAATAACAGGGAAGCAAGGTCTACTTGTTTAGATGGTCCTGATAACTACGACTATGGTGCATATCAATGGACTGTTCAACTCGTCACAAATGATAGCCGATTGGAAAAAATACTTTTCCCTATCTTCTGGGGCCTCATGACTCTCAGCACTTTTGGGAACCTAGAGAGCACAACGGAGCGGCTAGAAGTGATTTTCAACATTATTGTGTTGACTAGTGGCCTCCTTCTAGTCACTATGCTGATTGGAAACATCAAGGTGTTTTTGCATGCTACGACATCAAAGAAGCAAGCAATGCAATTGAAGATGAGGAACATCGAATGGTGGATGAGCAAAAGGCGATTGCCGCAAGGGTTCCGGCAGCGCGTGAGAAACTATGAGCGCCAGCGTTGGGCTGCCATGCGTGGGGTTGATGAATGCCAGATGATCAAAAATCTCCCCGAAGGACTAAGAAGGGACATCAAGTACCATCTTTGTTTGGATTTGGTCAGACAGGTGCCACTGTTTCAGCATATGGATGATTTGGTGCTAGAGAACATTTGCGACCGTGTGAAGTCACTTGTATTCACAAAAGGAGAAACAATAACAAGAGAAGGAGACCCGGTTCAAAGAATGTTATTTGTAGTAAGGGGTCACCTTCAGAGTAGCCAAGTCCTAAGAGACGGTGTGAAAAGTTGCTGCATGCTAGGGCCAGGGAACTTCAGTGGGGACGAGTTACTATCATGGTGTCTAAGAAGGCCCTTTATAGAACGGCTTCCACCATCTTCAAGCACATTGGTGACGCTTGAAACGACGGAGGCATTTGGGCTTGAGGCCCAAGACGTGAAGTATGTGACACAACATTTTAGGTACACATTTGTGAAGGAAAAGGTGAAGAGAAGTGCGAGGTATTACTCACCAGGGTGGAGAACTTGGGCTGCTGTGGCCATTCAATTGGCTTGGAGGAGGTATAGGCACCGTTTGACTTTGACTTCTTTGTCCTTTATAAGGCCACGTAGGCCTGCTTCAAGGTGCACTTCCATGGAAGAGGATAGGCTTCGTCTCTACACTGCTTTGTTAACCTCACCCAAGCCTAATCAGGATGACTTTGACTGCTGA 2079 0.4603 MSLSYARCFSLSHSPLLSSMATNHTLPDHHDSRVSRMHYYYSSDDNDSDLDLDLDDYNNNVSGSAFEEEPKKAESGGLRRKVAAAVAVEPRGKWVQEWNRVFLLVCATGLFVDPLFFYALSISDTCMCLFVDAWLLITVTVLRCMTDALHFWNIWLHFNIARRSFFLSADTTTPRYFALHYLTAKRTFFFDLFVILPIPQIVLWVAIPSLLEKGSITLVMTVFIIMFLFQYLPKIYHSVCLLRRMQNLSGYVFGTVWWGIALNLIAYFVASHAAGACWYLLGLQRAAKCLEEQCAKASGCGLRTLCCKEPIYYGGTNFVTDKTRLAWANNREARSTCLDGPDNYDYGAYQWTVQLVTNDSRLEKILFPIFWGLMTLSTFGNLESTTERLEVIFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMSKRRLPQGFRQRVRNYERQRWAAMRGVDECQMIKNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLVFTKGETITREGDPVQRMLFVVRGHLQSSQVLRDGVKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLVTLETTEAFGLEAQDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYRHRLTLTSLSFIRPRRPASRCTSMEEDRLRLYTALLTSPKPNQDDFDC 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01047 692 CDD CAP_ED 495 601 IPR000595 -
Cca10g01047 692 Gene3D Helix hairpin bin 420 486 - -
Cca10g01047 692 SUPERFAMILY cAMP-binding domain-like 421 609 IPR018490 -
Cca10g01047 692 SUPERFAMILY Voltage-gated potassium channels 90 416 - -
Cca10g01047 692 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 31 689 - -
Cca10g01047 692 ProSiteProfiles cAMP/cGMP binding motif profile. 495 605 IPR000595 -
Cca10g01047 692 Pfam Cyclic nucleotide-binding domain 515 603 IPR000595 -
Cca10g01047 692 Gene3D Jelly Rolls 493 611 IPR014710 -
Cca10g01047 692 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 31 689 - -
Cca10g01047 692 SMART cnmp_10 495 624 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01047 Cca-Chr10 12834397 12843697 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01047 88 691 Ion Channels AT5G54250 79.316 0.0 1006
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01047 K05391 - gmx:100800795 1125.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01047 10 12834397 12843697 Cca10g01047 10 12834397 12843697 ECH